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Update README.md
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CHKim5 authored Aug 23, 2021
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Expand Up @@ -11,6 +11,8 @@ The package includes

* Normality check (Shapiro Wilk test)

* Scheirer–Ray–Hare Test

* Volcano plot

* Heatmap
Expand Down Expand Up @@ -49,7 +51,9 @@ library(LMSstat)
#### Used in

* Simple statistics
* Barplot, Boxplot, Dotplot
* Barplot, Boxplot, Dotplot
* Volcano plot
* Scheirer–Ray–Hare Test
* PERMANOVA
* NMDS
* PCA
Expand Down Expand Up @@ -105,9 +109,10 @@ Classification<-read.csv("statT_G.csv",header = F)
```
Statfile<-Allstats(Data,Adjust_p_value = T, Adjust_method = "BH")
```

##### Adjustable parameters

* Adjust_p_value = T # Set True if adjustment is needed

* Adjust_method = F # Adjustment methods frequently used. c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY","fdr", "none")

```
Expand Down Expand Up @@ -178,6 +183,22 @@ write.csv(Result,"Normality_test_Result.csv")
<img src="https://user-images.githubusercontent.com/77651662/126578553-f2d583db-d649-4db7-92bb-8cfa9433904a.PNG" width="400" height="350">
</p>

### Scheirer–Ray–Hare Test

```
# csv files including significant variables (Multilevel, Group, interaction) and a Venn diagram are downloaded
SRH(Data)
```
<p align="center">
<img src="https://user-images.githubusercontent.com/77651662/130378279-fb49da48-dc7b-418e-88e7-db046364a4cc.PNG" width="400" height="350">
</p>

##### Adjustable parameters

* Adjust_p_value = T # Set True if adjustment is needed
* Adjust_method = "BH" # Adjustment methods frequently used. c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY","fdr", "none")


### Volcano plot

```
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