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Update AS_barplot.R
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@CHKim5
CHKim5 committed Aug 25, 2021
1 parent 0a0df51 commit a785fc9
Showing 1 changed file with 13 additions and 9 deletions.
22 changes: 13 additions & 9 deletions R/AS_barplot.R
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,8 @@
#' @param fig_height figure size
#' @param Y_text Y axis title size
#' @param X_text X axis text size
#' @param Y_lab y axis text size
#' @param T_size Title size
#'
#' @return ggbarplot
#' @export
Expand All @@ -35,7 +37,9 @@ AS_barplot<-function(data,
fig_width = NA,
fig_height = NA,
X_text = 10,
Y_text = 12){
Y_text = 12,
Y_lab = 10,
T_size =15){
{#Summary
###Plot_data_prep###
ifelse(!dir.exists(file.path(getwd(), "barplot")), dir.create(file.path(getwd(), "barplot")), FALSE)
Expand Down Expand Up @@ -122,7 +126,7 @@ AS_barplot<-function(data,
ggplot2::geom_errorbar( ggplot2::aes(x=Group, ymin=len-SEM, ymax=len+SEM), width=0.2, colour="Black", alpha=1, size=0.5)+
ggplot2::scale_y_continuous(label=ecoflux::scientific_10x)+
ggplot2::labs(title=NAMES[number],x =NULL, y = "Intensity")+
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=15,
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=T_size,
face="bold",
color="Black",
hjust=0.5,
Expand All @@ -135,7 +139,7 @@ AS_barplot<-function(data,
axis.title.y=ggplot2::element_text(size=Y_text), # Y axis title
axis.text.x=ggplot2::element_text(size=X_text,
vjust=.5), # X axis text
axis.text.y=ggplot2::element_text(size=10),
axis.text.y=ggplot2::element_text(size=Y_lab),
legend.position = legend_position)+
ggpubr::stat_pvalue_manual(stat.test,
y.position = 1.05 * max(data[["Data_renamed"]][,number]),
Expand All @@ -160,7 +164,7 @@ AS_barplot<-function(data,
ggplot2::geom_errorbar( ggplot2::aes(x=Group, ymin=len-SEM, ymax=len+SEM), width=0.2, colour="Black", alpha=1, size=0.5)+
ggplot2::scale_y_continuous(label=ecoflux::scientific_10x)+
ggplot2::labs(title=NAMES[number],x =NULL, y = "Intensity")+
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=15,
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=T_size,
face="bold",
color="Black",
hjust=0.5,
Expand All @@ -173,7 +177,7 @@ AS_barplot<-function(data,
axis.title.y=ggplot2::element_text(size=Y_text), # Y axis title
axis.text.x=ggplot2::element_text(size=X_text,
vjust=.5), # X axis text
axis.text.y=ggplot2::element_text(size=10),
axis.text.y=ggplot2::element_text(size=Y_lab),
legend.position = legend_position)

ggplot2::ggsave(filename = paste(NAMES[number],"barplot.jpg",collapse = ""),
Expand Down Expand Up @@ -241,7 +245,7 @@ AS_barplot<-function(data,
ggplot2::geom_errorbar( ggplot2::aes(x=Group, ymin=len-SEM, ymax=len+SEM), width=0.2, colour="Black", alpha=1, size=0.5)+
ggplot2::scale_y_continuous(label=ecoflux::scientific_10x)+
ggplot2::labs(title=NAMES[number],x =NULL, y = "Intensity")+
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=15,
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=T_size,
face="bold",
color="Black",
hjust=0.5,
Expand All @@ -254,7 +258,7 @@ AS_barplot<-function(data,
axis.title.y=ggplot2::element_text(size=Y_text), # Y axis title
axis.text.x=ggplot2::element_text(size=X_text,
vjust=.5), # X axis text
axis.text.y=ggplot2::element_text(size=10),
axis.text.y=ggplot2::element_text(size=Y_lab),
legend.position = legend_position)+
ggpubr::stat_pvalue_manual(stat.test,
y.position = 1.05 * max(data[["Data_renamed"]][,number]),
Expand All @@ -280,7 +284,7 @@ AS_barplot<-function(data,
ggplot2::geom_errorbar( ggplot2::aes(x=Group, ymin=len-SEM, ymax=len+SEM), width=0.2, colour="Black", alpha=1, size=0.5)+
ggplot2::scale_y_continuous(label=ecoflux::scientific_10x)+
ggplot2::labs(title=NAMES[number],x =NULL, y = "Intensity")+
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=15,
ggplot2::theme_classic()+ ggplot2::theme(plot.title=ggplot2::element_text(size=T_size,
face="bold",
color="Black",
hjust=0.5,
Expand All @@ -293,7 +297,7 @@ AS_barplot<-function(data,
axis.title.y=ggplot2::element_text(size=Y_text), # Y axis title
axis.text.x=ggplot2::element_text(size=X_text,
vjust=.5), # X axis text
axis.text.y=ggplot2::element_text(size=10),
axis.text.y=ggplot2::element_text(size=Y_lab),
legend.position = legend_position)

ggplot2::ggsave(filename = paste(NAMES[number],"barplot.jpg",collapse = ""),
Expand Down

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