Updated config template file.

config/es_loader.yml.j2

@@ -2,71 +2,4 @@ Config:
   neo4j_uri: bolt://{{neo4j_ip}}:7687
   neo4j_user: neo4j
   neo4j_password: "{{ neo4j_password }}"
-  es_host: {{ es_host }}
-
-  index_name: dashboard
-  mapping:
-    programs:
-      type: keyword
-    studies:
-      type: keyword
-    subject_id:
-      type: keyword
-    diagnoses:
-      type: keyword
-    rc_scores:
-      type: keyword
-    tumor_sizes:
-      type: keyword
-    chemo_regimen:
-      type: keyword
-    tumor_grades:
-      type: keyword
-    er_status:
-      type: keyword
-    pr_status:
-      type: keyword
-    endo_therapies:
-      type: keyword
-    meno_status:
-      type: keyword
-    tissue_type:
-      type: keyword
-    composition:
-      type: keyword
-    association:
-      type: keyword
-    file_type:
-      type: keyword
-
-  cypher_query: "
-    MATCH (ss)<-[:sf_of_study_subject]-(sf)
-    MATCH (ss)<-[:diagnosis_of_study_subject]-(d)<-[:tp_of_diagnosis]-(tp)
-    MATCH (ss:study_subject)-[:study_subject_of_study]->(s)-[:study_of_program]->(p)
-    MATCH (ss)<-[:demographic_of_study_subject]-(demo)
-    MATCH (ss)<-[:sample_of_study_subject]-(samp)
-    MATCH (ss)<-[*..2]-(parent)<--(f:file)
-    OPTIONAL MATCH (f)-[:file_of_laboratory_procedure]->(lp)
-    OPTIONAL MATCH (ss)-[:study_subject_of_study]->(s)-[:study_of_program]->(p)
-    OPTIONAL MATCH (ss)<-[:sf_of_study_subject]-(sf)
-    OPTIONAL MATCH (ss)<-[:diagnosis_of_study_subject]-(d)
-    OPTIONAL MATCH (d)<-[:tp_of_diagnosis]-(tp)
-    OPTIONAL MATCH (ss)<-[:demographic_of_study_subject]-(demo)
-    RETURN
-    p.program_acronym AS programs,
-    (s.study_acronym + ': ' + s.study_short_description) AS studies,
-    ss.study_subject_id AS subject_id,
-    ss.disease_subtype AS diagnoses,
-    sf.grouped_recurrence_score AS rc_scores,
-    d.tumor_size_group AS tumor_sizes,
-    tp.chemotherapy_regimen AS chemo_regimen,
-    d.tumor_grade AS tumor_grades,
-    d.er_status AS er_status,
-    d.pr_status AS pr_status,
-    tp.endocrine_therapy_type AS endo_therapies,
-    demo.menopause_status AS  meno_status,
-    COLLECT(DISTINCT samp.tissue_type) AS tissue_type,
-    COLLECT(DISTINCT samp.composition) AS composition,
-    COLLECT(DISTINCT head(labels(parent))) AS association,
-    COLLECT(DISTINCT f.file_type) AS file_type
-    "
+  es_host: {{ es_host }}