v0.3.0

0.3.0 (2023-06-02)

Features

• .snplist input to simphenotype (#217) (cb18970)
• Added ability to read tandem repeats with GenotypesTR (#204) (6257264)
• Added ability to set vcftype for reading str files (#214) (0d734cd)
• Clump (#211) (3740ec1)
• do not require sorting .hap lines by line type (#208) (f221397)
• new Phenotypes.subset() method (#203) (c5594d9)
• simphenotype --environment option (#216) (bf69147)
• Simphenotype and Index Repeat Support (#209) (9e2ffe1)

Bug Fixes

• Covariates.__init__ after updates to parent class (#206) (ce2337b)
• Added logic to finding all coord files (#201) (be1d992)
• check missing to check for 254 (#213) (afeab85)
• explicitly ignore repeats in the ld command (#218) (b9d0da1)
• GenotypesTR to properly load repeat count instead of GT (#212) (93a4eb2)