chore(main): release 0.4.0 #223
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🤖 Release is at https://github.com/CAST-genomics/haptools/releases/tag/v0.4.0 🌻 |
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🤖 I have created a release beep boop
0.4.0 (2024-01-14)
This new version incorporates a number of bug fixes and exciting new features! Notably, it adds support for python 3.11 (whilst keeping support for python 3.7 for @TaraMirmira). And per a recent request by @XimeiWulilyy (and @s041629 a while ago), the haptools transform command now accepts multiallelic variants. Also, a quick shoutout to @RJDan for pointing out issues with the example script for converting
.blocks.detfiles into.hapfiles.Features
GenotypesPLINKTRclass for reading TRs from PGEN files (#222) (3c7abe6)This brings us one giant step closer to being able to analyze TRs in PLINK2! See feat: a
dosagecommand for storing TR motif counts in PGEN files #221 for the remaining work that is needed.transform(#232) (371415c)Bug Fixes
UnboundLocalErrorarising from headerless.hapfiles (#229) (a499b0c)Phenotypes.subset(inplace=True)would raise an AttributeError (#226) (cff6d9b)samplesargument inGenotypes.readinto a set and fixtr_harmonizerbug arising when TRTools is also installed (#225) (06cc273)Documentation
.blocks.detto.hapconversion in API docs (#236) (1ed9139)This PR was generated with Release Please. See documentation.