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upstream sgn 377.1 #135

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@nickpalladino nickpalladino commented Dec 21, 2023 •
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Changes from upstream.

  • changed branch name so github actions would run on branch

Pulling from upstream documentation.

dwaring87 and others added 30 commits October 30, 2023 16:30
@dwaring87
Label Designer: Move sorting options to main page
c3e5083
@dwaring87
Label Designer: Add UI for trial layout sorting
9a92230
@dwaring87
Field Map: update UI for plot order download
405bd8e
@dwaring87
[WIP] Trial: backend function for ordering plots
5d8fba8
@dwaring87
Plot Ordering: add additional fields
b2a5038 
order index
accession name, seedlot name, location name
@dwaring87
Plot Sorting: move function to CXGN::Trial class
2cd1db0
@dwaring87
Trial Layout: download plot order using new backend function
0d10b5a
@dwaring87
Plot Sorting: add support for including border plots
a0ec81e
@dwaring87
Plot Sorting: add option to include gaps / missing plots
1ccdecc
@dwaring87
Trial Layout: only display plot order download section for trials wit…
236864e 
…h defined layouts
@dwaring87
Label Designer: Sort labels by plot layout order
da366f7
@MFlores2021
add ajax get_new_vector_uniquename
99fa123
@dwaring87
Trial Layout: display error messages from layout download
3eb7f5c
@MFlores2021
add autogenerated vector names
2f9b706
@MFlores2021
add check to autogenerate uniquename
dfd6285
@dwaring87
Field Map Plot Order Download: Add HarvestMaster format
820b7c8
@lukasmueller
update empty fixture to something that is more up to date.
58ab530
@dwaring87
Seedlot Upload: check if name already exists as any stock
391cac2
@isaak
update ... _stock_no getters and setters names
1ea700e
@MFlores2021
add upload vectors test
c02473d
@MFlores2021
add upload vectors test files
e546758
@MFlores2021
change stock name by vector name in the results table
45d505b
@lukasmueller
Merge branch 'topic/fix-DiGGer-trial-design' into topic/add_host_to_v…
5f492bf 
…ectors
@dwaring87
Seedlot Upload: Add name check to Seedlot Harvested template
c9a8424
@titima15
fixed seedlot table and added weight
c7a3fce
@lukasmueller
fix test by adding no_plan directive.
f8e423f
@isaak
Merge branch 'topic/fix-DiGGer-trial-design' into topic/fix_prep_desi…
3fd628d 
…gn_test
@isaak
replace hardcoded design key and pass test
63512f2
@MFlores2021
change vector uniquename input as readonly
eb6e2af
@MFlores2021
fix xlsx not readed
5d31f68
titima15 and others added 29 commits December 6, 2023 14:04
@titima15
added tissue_samples list_type
f226550
@titima15
modified test
3005f95
@titima15
Merge branch 'master' into topic/plot_info
35f5c65
@darekbienkowski
Merge pull request solgenomics#4744 from solgenomics/topic/update_emp…
2a1f75e 
…ty_fixture

update empty fixture to something that is more up to date.
@chris263
fixing columns check to upload multi trials
f2f75d4
@chris263
adding column to upload trial
df721ee
@chris263
fixing checks to upload multi trials
43e3ecc
@chris263
fixing variables to upload multi trials
978a39b
@chris263
fixing parsing upload multi trials
ee6cea5
@chris263
fixing parsing name multi trials
2b7f761
@chris263
fixing parsing columns multi trials
63831c0
@chris263
fixing seedlot names in multi trials
6612b3a
@chris263
fixing names in upload plugin
bbd7e1e
@dwaring87
Plot Order Download: simplify download function
c6c3b21
@dwaring87
Plot Order Download: toggle harvestmaster row/range when changed
5eda83c
@darekbienkowski
Merge pull request solgenomics#4754 from solgenomics/topic/label_desi…
655a346 
…gner_sorting

Label Designer Sorting: support Public Lists
@darekbienkowski
Merge pull request solgenomics#4755 from solgenomics/topic/plot_info
b95d1c0 
Improve related stock section on stock details page and add related seedlot info specific to plot and plant details pages ("source of" or "derived from" type)
@darekbienkowski
Merge pull request solgenomics#4756 from solgenomics/topic/fixing_upl…
9ae4885 
…oad_trial_plugin

Topic/fixing upload trial plugin
@dwaring87
Fieldmap: reimplement d3 rebind
2a90e18 
clicking on a plot is not working!
@dwaring87
Legacy v3 of D3
b2390cf 
add v3 of d3 to the d3v3 namespace (since it's now replaced with v4)
replace the usage of d3 in fieldmap.js with d3v3
@lukasmueller
Merge pull request solgenomics#4759 from solgenomics/topic/d3_rebind
5dc670e 
Fieldmap: use legacy v3 of d3
@isaak
remove d3v4
eb84278
@lukasmueller
Merge pull request solgenomics#4762 from solgenomics/topic/fieldmap-d…
161d9e1 
…3V3-fix

remove d3v4 lfrom fieldmap.mas
@darekbienkowski
fix for transplate date and multi trial upload file
ddc0c0a
@darekbienkowski
multi trail test names updated
8bfa6a6
@darekbienkowski
multi trail test fields updated
314441d
@darekbienkowski
Merge pull request solgenomics#4753 from solgenomics/topic/harvest_ma…
b21a5f4 
…ster_download

Field Layout Download: Harvest Master download type
@darekbienkowski
Merge pull request solgenomics#4763 from solgenomics/topic/multitrial…
1de9975 
…_transplate_date_fix

fix for transplate date and multi trial upload file
@mlm483
Merge solgenomics/master into develop
02c663b
@mlm483 mlm483 mentioned this pull request Jan 2, 2024
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9 participants
@nickpalladino @dwaring87 @MFlores2021 @lukasmueller @isaak @titima15 @darekbienkowski @chris263 @mlm483