v1.1.0

This includes many feature updates - including:

• The ability to get target + off-target SNPs from MADC files
• Support added for PolyRAD dosage calling (this is 100x faster than Updog at the expense of slightly more memory usage)
• Support for SVG figure download
• Export VCF as bgzipped files for interoperability with other tools
• UI improvements and bug fixes

This version will require R 4.4.0

v1.0.0

This full public release of BIGapp includes:

• Bug fixes
• Updated genomic selection methods to use relationship matrices
• Improved error handling
• Updated GWAS functions
• Updated PCA figure customization
• Improved Help tab information and links within each analysis tab
• Updated UI to be more consistent throughout

v0.6.1-beta

-Minor bug fixes

v0.6.0-beta

Bug fixes and feature enhancements:

• Updated Dosage Calling tab to allow user to subset genotyping data and select parental genotypes depending on Updog model
• Genomic Selection can now use pedigree information for generating the relationship matrices

v0.5.0-beta

• Original code was updated into the R Golem format
• System checks added
• Improved app stability
• New user warnings
• Updates to UI
• New plot added to PCA tab
• New Genomic Selection tab

v0.3.0

• Updated all analyses to use VCF
• Added VCF filtering functions
• Added ability to convert from DArT Dose Report and Counts files to VCF
• Updated Genomic Prediction analysis to use 5-fold cv
• Bug fixes for PCA figures

v0.2.0-alpha: Multiple Updates

• Added DAPC analysis tab
• Combined DAPC and PCA under a common "Population Structure" tab
• Updated the BIG logo

Initial release

This is the initial release for the BIG app. Several analysis tabs are still in development.