Removed extra .vcf from output name if present

R/mod_DosageCall.R

@@ -392,7 +392,8 @@ mod_DosageCall_server <- function(input, output, session, parent_session){
 
   output$download_updog_vcf <- downloadHandler(
     filename = function() {
-      paste0(input$output_name, ".vcf.gz")
+      output_name <- gsub("\\.vcf$", "", input$output_name)
+      paste0(output_name, ".vcf.gz")
     },
     content = function(file) {
       #Save Updog output as VCF file

R/mod_Filtering.R

@@ -318,7 +318,8 @@ mod_Filtering_server <- function(input, output, session, parent_session){
   #Updog filtering
   output$start_updog_filter <- downloadHandler(
     filename = function() {
-      paste0(input$filter_output_name, ".vcf.gz")
+      output_name <- gsub("\\.vcf$", "", input$filter_output_name)
+      paste0(output_name, ".vcf.gz")
     },
     content = function(file) {
 

R/mod_dosage2vcf.R

@@ -162,7 +162,8 @@ mod_dosage2vcf_server <- function(input, output, session, parent_session){
   ##This is for the DArT files conversion to VCF
   output$download_d2vcf <- downloadHandler(
     filename = function() {
-      paste0(input$d2v_output_name, ".vcf.gz")
+      output_name <- gsub("\\.vcf$", "", input$d2v_output_name)
+      paste0(output_name, ".vcf.gz")
     },
     content = function(file) {
       # Ensure the files are uploaded