update dependencies (#12)

* update dependencies

* update lychee version

.github/workflows/build_push.yml

@@ -11,37 +11,25 @@ on:
   workflow_dispatch:
     inputs:
       r_version:
-        description: R Version
+        description: R Version (X.Y.Z)
         required: true
-        type: choice
-        default: "4.3.2"
-        options:
-          - "4.3.2"
-          - "latest"
+        default: ""
+        type: string
       quarto_version:
-        description: Quarto version
+        description: Quarto version (X.Y.Z)
         required: true
-        type: choice
-        default: "1.3.450"
-        options:
-          - "1.3.450"
-          - "latest"
+        default: "latest"
+        type: string
       pandoc_version:
-        description: Pandoc version
+        description: Pandoc version (X.Y.Z)
         required: true
-        type: choice
-        default: "2.9.2.1"
-        options:
-          - "2.9.2.1"
-          - "latest"
+        default: "latest"
+        type: string
       cran_snapshot_date:
         description: CRAN packages snapshot date (YYYY-MM-DD)
         required: true
-        type: choice
-        default: "2024-01-12"
-        options:
-          - "2024-01-12"
-          - "latest"
+        default: ""
+        type: string
       custom_tag:
         description: Custom image tag
         required: false

Dockerfile

@@ -12,8 +12,8 @@ ARG CRAN=https://packagemanager.posit.co/cran/__linux__/jammy/latest
 ARG PANDOC_VERSION=2.9.2.1
 # https://github.com/quarto-dev/quarto-cli/tags
 ARG QUARTO_VERSION=1.3.450
-# https://github.com/lycheeverse/lychee-action/tags
-ARG LYCHEE_VERSION=0.14.3
+# https://github.com/lycheeverse/lychee/releases/
+ARG LYCHEE_VERSION=0.15.1
 
 # Set up environment 
 ENV R_HOME=/usr/local/lib/R
@@ -25,8 +25,7 @@ COPY rocker_scripts/scripts /rocker_scripts
 RUN /rocker_scripts/install_R_source.sh && \
     /rocker_scripts/setup_R.sh && \
     /rocker_scripts/install_pandoc.sh && \
-    /rocker_scripts/install_quarto.sh && \
-    /rocker_scripts/install_texlive.sh
+    /rocker_scripts/install_quarto.sh 
 
 COPY scripts /scripts
 RUN /scripts/install_sys_deps.sh && \

scripts/install_r_pkgs.R

@@ -5,7 +5,7 @@ install.packages("pak")
 
 # Packages to install
 install_pkgs <- c(
-  "boehringer-ingelheim/davinci",
+  "tinytex",
   "rcmdcheck",
   "roxygen2",
   "lintr",
@@ -32,5 +32,8 @@ pak::pak(
   upgrade = FALSE
 )
 
+# Install tinytex
+tinytex::install_tinytex()
+
 # Remove DaVinci packages from image
 grep("^dv.", rownames(installed.packages()), value = TRUE) |> sapply(remove.packages)

scripts/install_sys_deps.sh

@@ -19,4 +19,4 @@ apt-get autoclean -y
 rm -rf /var/lib/apt/lists/*
 
 # Install lychee URL checker
-curl -Ls https://github.com/lycheeverse/lychee/releases/download/v"${LYCHEE_VERSION}"/lychee-v"${LYCHEE_VERSION}"-"$(arch)"-unknown-linux-gnu.tar.gz | tar xz -C /usr/local/bin
+curl -Ls https://github.com/lycheeverse/lychee/releases/download/v"${LYCHEE_VERSION}"/lychee-v"${LYCHEE_VERSION}"-"$(arch)"-unknown-linux-gnu.tar.gz | tar xz -C /usr/local/bin