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py-connectome-manipulator: update with new PyPI version. #2479

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py-connectome-manipulator: update with new PyPI version. #2479

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5be8a71
py-connectome-manipulator: update with new PyPI version.
matz-e Jul 12, 2024
6e287d0
py-connectome-manipulator: fix dependencies in setup.py
matz-e Jul 15, 2024
7a69f9f
❄️
matz-e Jul 15, 2024
58d1120
py-connectome-manipulator: alter dependencies
matz-e Jul 16, 2024
dbcecf4
py-connectome-manipulator: relax more
matz-e Jul 18, 2024
d8d0c97
py-connectome-manipulator: fix dependencies.
matz-e Jul 22, 2024
ebc591e
bump.
matz-e Aug 13, 2024
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44 changes: 44 additions & 0 deletions bluebrain/repo-bluebrain/packages/py-connectome-manipulator/dependencies.patch
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Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
diff --git a/setup.py b/setup.py
index b01db74160e3a30fe28fda59c435bd8d78b2685f..9229b74e1429419c1c4dd8badf3bcec7105dd604 100644
--- a/setup.py
+++ b/setup.py
@@ -32,19 +32,19 @@
license="Apache-2",
install_requires=[
"bluepysnap==3.0.1",
- "numpy==1.24.3",
- "pandas==2.0.2",
- "progressbar==2.5",
- "pyarrow==14.0.1",
- "scipy==1.10.1",
- "scikit-learn==1.5.0",
- "voxcell==3.1.5",
- "tables==3.8.0", # Optional dependency of pandas.DataFrame.to_hdf()
- "distributed==2023.6.0", # Dask
- "dask-mpi==2022.4.0",
+ "numpy>=1.24.3",
+ "pandas>=1.5.3",
+ "progressbar>=2.5",
+ "pyarrow>=10.0.1",
+ "scipy>=1.10.1",
+ "scikit-learn>=1.3.2",
+ "voxcell>=3.1.5",
+ "tables>=3.8.0", # Optional dependency of pandas.DataFrame.to_hdf()
+ "distributed>=2023.4.1", # Dask
+ "dask-mpi>=2022.4.0",
],
packages=find_packages(),
- python_requires="==3.10.*",
+ python_requires=">=3.10",
extras_require={"docs": ["sphinx", "sphinx-bluebrain-theme"]},
entry_points={
"console_scripts": [
@@ -59,6 +59,8 @@
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
+ "Programming Language :: Python :: 3.11",
+ "Programming Language :: Python :: 3.12",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
24 changes: 12 additions & 12 deletions bluebrain/repo-bluebrain/packages/py-connectome-manipulator/package.py
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Expand Up @@ -11,9 +11,9 @@ class PyConnectomeManipulator(PythonPackage):
"""Connectome generator tool."""

homepage = "https://github.com/BlueBrain/connectome-manipulator"
git = "https://github.com/BlueBrain/connectome-manipulator.git"
pypi = "connectome-manipulator/connectome_manipulator-1.0.0.tar.gz"

version("0.0.10", tag="connectome-manipulator-v0.0.10")
version("1.0.1", sha256="6908e8a19681da9beda577d4f9e6f0fa518060f2a66b76a1ca0027b30478ac40") # FIXME

variant(
"convert",
Expand All @@ -24,13 +24,13 @@ class PyConnectomeManipulator(PythonPackage):
depends_on("[email protected]:", type="run", when="+convert")

depends_on("[email protected]:", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-progressbar", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-scikit-learn", type=("build", "run"))
depends_on("py-voxcell", type=("build", "run"))
depends_on("py-pyarrow+parquet+dataset", type=("build", "run"))
depends_on("py-distributed", type=("build", "run"))
depends_on("py-dask-mpi", type=("build", "run"))
depends_on("py-tables", type=("build", "run"))
depends_on("py-numpy@1.24.3:", type=("build", "run"))
depends_on("py-pandas@1.5.3:", type=("build", "run"))
depends_on("py-progressbar@2.5:", type=("build", "run"))
depends_on("py-scipy@1.10.1:", type=("build", "run"))
depends_on("py-scikit-learn@1.3.2:", type=("build", "run"))
depends_on("py-voxcell@3.1.5:", type=("build", "run"))
depends_on("py-pyarrow+parquet+dataset@10.0.1:", type=("build", "run"))
depends_on("py-distributed@2023.4.1:", type=("build", "run"))
depends_on("py-dask-mpi@2022.4.0:", type=("build", "run"))
depends_on("py-tables@3.8.0:", type=("build", "run"))
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