py-connectome-manipulator: fix dependencies in setup.py

bluebrain/repo-bluebrain/packages/py-connectome-manipulator/dependencies.patch

@@ -0,0 +1,44 @@
+diff --git a/setup.py b/setup.py
+index b01db74160e3a30fe28fda59c435bd8d78b2685f..9229b74e1429419c1c4dd8badf3bcec7105dd604 100644
+--- a/setup.py
++++ b/setup.py
+@@ -32,19 +32,19 @@
+     license="Apache-2",
+     install_requires=[
+         "bluepysnap==3.0.1",
+-        "numpy==1.24.3",
+-        "pandas==2.0.2",
+-        "progressbar==2.5",
+-        "pyarrow==14.0.1",
+-        "scipy==1.10.1",
+-        "scikit-learn==1.5.0",
+-        "voxcell==3.1.5",
+-        "tables==3.8.0",  # Optional dependency of pandas.DataFrame.to_hdf()
+-        "distributed==2023.6.0",  # Dask
+-        "dask-mpi==2022.4.0",
++        "numpy>=1.24.3",
++        "pandas>=2.0.2",
++        "progressbar>=2.5",
++        "pyarrow>=14.0.1",
++        "scipy>=1.10.1",
++        "scikit-learn>=1.5.0",
++        "voxcell>=3.1.5",
++        "tables>=3.8.0",  # Optional dependency of pandas.DataFrame.to_hdf()
++        "distributed>=2023.6.0",  # Dask
++        "dask-mpi>=2022.4.0",
+     ],
+     packages=find_packages(),
+-    python_requires="==3.10.*",
++    python_requires=">=3.10",
+     extras_require={"docs": ["sphinx", "sphinx-bluebrain-theme"]},
+     entry_points={
+         "console_scripts": [
+@@ -59,6 +59,8 @@
+         "Programming Language :: Python",
+         "Programming Language :: Python :: 3",
+         "Programming Language :: Python :: 3.10",
++        "Programming Language :: Python :: 3.11",
++        "Programming Language :: Python :: 3.12",
+         "Topic :: Scientific/Engineering",
+         "Topic :: Scientific/Engineering :: Bio-Informatics",
+     ],

bluebrain/repo-bluebrain/packages/py-connectome-manipulator/package.py

@@ -15,6 +15,12 @@ class PyConnectomeManipulator(PythonPackage):
 
     version("1.0.0", sha256="f77151bc7569f9d18d77dad04cd9fa24c403989ea28a1811566cc49332a785ef")
 
+    # Fixes dependency and Python version requirements
+    patch(
+        "dependencies.patch",
+        when="@1.0.0",
+    )
+
     variant(
         "convert",
         default=False,