Add forge methods to acces/query datasets from external sources

examples/configurations/dataset-store/prod_nexus_datasets.yml

@@ -0,0 +1,98 @@
+Model:
+  name: RdfModel
+  origin: store
+  source: BlueBrainNexus
+  context:
+    iri: "https://bbp.neuroshapes.org"
+    bucket: "neurosciencegraph/datamodels"
+Store:
+  name: BlueBrainNexus
+  endpoint: https://bbp.epfl.ch/nexus/v1
+  model:
+    name: RdfModel
+  searchendpoints:
+    sparql:
+      endpoint: "https://bluebrain.github.io/nexus/vocabulary/defaultSparqlIndex"
+    elastic:
+      endpoint: "https://bbp.epfl.ch/neurosciencegraph/data/views/aggreg-es/dataset"
+      mapping: "https://bbp.epfl.ch/neurosciencegraph/data/views/es/dataset"
+      default_str_keyword_field: "keyword"
+  vocabulary:
+    metadata:
+      iri: "https://bluebrain.github.io/nexus/contexts/metadata.json"
+      local_iri: "https://bluebrainnexus.io/contexts/metadata.json"
+    namespace: "https://bluebrain.github.io/nexus/vocabulary/"
+    deprecated_property: "https://bluebrain.github.io/nexus/vocabulary/deprecated"
+    project_property: "https://bluebrain.github.io/nexus/vocabulary/project"
+  max_connection: 50
+  versioned_id_template: "{x.id}?rev={x._store_metadata._rev}"
+  file_resource_mapping: https://raw.githubusercontent.com/BlueBrain/nexus-forge/master/examples/configurations/nexus-store/file-to-resource-mapping.hjson
+
+Resolvers:
+  ontology:
+    - resolver: OntologyResolver
+      origin: store
+      source: BlueBrainNexus
+      targets:
+        - identifier: terms
+          bucket: neurosciencegraph/datamodels
+      searchendpoints:
+        sparql:
+          endpoint: "https://bluebrain.github.io/nexus/vocabulary/defaultSparqlIndex"
+      result_resource_mapping: https://raw.githubusercontent.com/BlueBrain/nexus-forge/master/examples/configurations/nexus-resolver/term-to-resource-mapping.hjson
+  agent:
+    - resolver: AgentResolver
+      origin: store
+      source: BlueBrainNexus
+      targets:
+        - identifier: agents
+          bucket: bbp/agents
+      searchendpoints:
+        sparql:
+          endpoint: "https://bluebrain.github.io/nexus/vocabulary/defaultSparqlIndex"
+      result_resource_mapping: https://raw.githubusercontent.com/BlueBrain/nexus-forge/master/examples/configurations/nexus-resolver/agent-to-resource-mapping.hjson
+
+Formatters:
+  identifier: https://bbp.epfl.ch/neurosciencegraph/data/{}/{}
+  identifier_neuroelectro: http://neuroelectro.org/api/1/{}/{}
+  identifier_neurolex: http://neurolex.org/wiki/{}
+
+Datasets:
+  UniProt:
+    origin: store
+    source: SPARQLStore
+    searchendpoints:
+      sparql:
+        endpoint: "https://sparql.uniprot.org/sparql"
+    model: 
+      name: RdfModel 
+      origin: directory
+      source: /Users/cgonzale/Documents/code/nexus-forge/examples/database-sources/UniProt
+      context:
+        iri: /Users/cgonzale/Documents/code/nexus-forge/examples/database-sources/UniProt/jsonld_context.json
+  NeuroElectro:
+    origin: store
+    source: BlueBrainNexus
+    bucket: bbp/neuroelectro
+    model:
+      name: RdfModel
+      origin: directory
+      source: /Users/cgonzale/Documents/code/nexus-forge/examples/database-sources/NeuroElectro
+      context:
+        iri: /Users/cgonzale/Documents/code/nexus-forge/examples/models/neuroshapes_context.json 
+  NeuroMorpho:
+    origin: web_service
+    source: http://neuromorpho.org/api/neuron
+    health: http://neuromorpho.org/api/health
+    files_download:
+      endpoint: https://neuromorpho.org/dableFiles
+      Accept: "*/*"
+    max_connection: 50
+    content_type: application/json;charset=UTF-8
+    accept: "*/*"
+    model:
+      name: RdfModel
+      origin: directory
+      source: /Users/cgonzale/Documents/code/nexus-forge/examples/database-sources/Neuromorpho
+      context:
+        iri: /Users/cgonzale/Documents/code/nexus-forge/examples/database-sources/Neuromorpho/jsonld_context.json

examples/mappings/NeuroMorpho/mappings/DictionaryMapping/NeuronMorphology.hjson

@@ -4,7 +4,6 @@
         NeuronMorphology
         Entity
     ]
-    id: forge.format('identifier', 'neuronmorphologies/neuromorpho', f'{x.bbpID}')
     brainLocation: {
         type: BrainLocation
         brainRegion: forge.resolve(x.brain_region[0], scope='ontology', strategy='EXACT_CASE_INSENSITIVE_MATCH')