Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add custom_analyses #8

Draft
wants to merge 25 commits into
base: main
Choose a base branch
from
Draft

Add custom_analyses #8

wants to merge 25 commits into from

Commits on Dec 8, 2023

  1. Add custom_analyses

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 8, 2023
    Configuration menu
    Copy the full SHA
    5ea129b View commit details
    Browse the repository at this point in the history

Commits on Dec 11, 2023

  1. Add custom analysis a02 using submitit

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 11, 2023
    Configuration menu
    Copy the full SHA
    bc55740 View commit details
    Browse the repository at this point in the history

Commits on Dec 12, 2023

  1. Update requirements.txt

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 12, 2023
    Configuration menu
    Copy the full SHA
    730436b View commit details
    Browse the repository at this point in the history

  2. Call clean_slurm_env

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 12, 2023
    Configuration menu
    Copy the full SHA
    ca8c926 View commit details
    Browse the repository at this point in the history

  3. Log the type of executor

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 12, 2023
    Configuration menu
    Copy the full SHA
    a21e55c View commit details
    Browse the repository at this point in the history

Commits on Dec 19, 2023

  1. Add wait_for_slurm

    @GianlucaFicarelli
    GianlucaFicarelli committed Dec 19, 2023
    Configuration menu
    Copy the full SHA
    f97b90d View commit details
    Browse the repository at this point in the history

Commits on Feb 9, 2024

  1. Merge remote-tracking branch 'origin/main' into custom-analyses 

    * origin/main:
  Add tests for Python 3.12 (#16)
  Remove pytest-lazy-fixture (#15)
  Add CLI to convert and import inferred spikes in CSV format (#14)
  Apply black 24.1, pin pytest<8 (#12)
  Install tree when building readthedocs (#11)
  Add a simple simulation campaign using a subsampled circuit (#10)
  Support relative paths in the simulation campaign config (#9)
    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    68b9e6a View commit details
    Browse the repository at this point in the history

Commits on Feb 16, 2024

  1. Add emodel_00

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    e3c3353 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Add emodel_00 using bluecellulab

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    7bef1b5 View commit details
    Browse the repository at this point in the history

  2. Fix path

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    993bbb1 View commit details
    Browse the repository at this point in the history

  3. Log BLUECELLULAB_MOD_LIBRARY_PATH

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    2a60e04 View commit details
    Browse the repository at this point in the history

Commits on Feb 22, 2024

  1. Fix to_python()

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 22, 2024
    Configuration menu
    Copy the full SHA
    c915280 View commit details
    Browse the repository at this point in the history

Commits on Feb 28, 2024

  1. Use emodel metadata and recipes.json

    @GianlucaFicarelli
    GianlucaFicarelli committed Feb 28, 2024
    Configuration menu
    Copy the full SHA
    d4a81cd View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2024

  1. Merge remote-tracking branch 'origin/main' into custom-analyses 

    * origin/main:
  [NSETM-2281] Fix calculation of dynamic offset (#19)
  Fix changelog (#18)
  [NSETM-2280] Allow to specify trial_steps_list (#17)
    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    1f30710 View commit details
    Browse the repository at this point in the history

  2. Update to bluecellulab>=2.3.2

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    57e5407 View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2024

  1. Refactor code, revert to bluecellulab<2.3.2

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 7, 2024
    Configuration menu
    Copy the full SHA
    780e0e3 View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'origin/main' into custom-analyses 

    * origin/main:
  Fix expected data in functional tests (#20)
    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 7, 2024
    Configuration menu
    Copy the full SHA
    4e7b409 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. Minor changes to emodel_00

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    fb57147 View commit details
    Browse the repository at this point in the history

  2. Add emodel_01 example

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    7d2ebe1 View commit details
    Browse the repository at this point in the history

  3. Use click

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    5f9f285 View commit details
    Browse the repository at this point in the history

  4. Add run.sh

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    746cca4 View commit details
    Browse the repository at this point in the history

  5. Do not pass iteration to LocalAccessPoint

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    3a1e2f4 View commit details
    Browse the repository at this point in the history

  6. Change the working directory

    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    68da347 View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2024

  1. Simplify loading of the morphology 

    according to the latest recipes.json format
    @GianlucaFicarelli
    GianlucaFicarelli committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    78431fe View commit details
    Browse the repository at this point in the history

Commits on Mar 25, 2024

  1. Set default holding_current and threshold_current to 0.0

    @GianlucaFicarelli
    GianlucaFicarelli authored Mar 25, 2024
    Configuration menu
    Copy the full SHA
    f658839 View commit details
    Browse the repository at this point in the history