RLBase

Quick-Start

RLBase can be accessed here: https://gccri.bishop-lab.uthscsa.edu/rlbase/

Please see the "Documentation" section in RLBase for additional details.

Issues and Bug Reports

Please open an issue if you find any errors or unexpected behavior. Please make sure to document:

1. What you tried
2. What the result was
3. What you expected the result to be
4. Steps (if any) which you took to resolve the issue and their outcomes.

Launch RLBase locally

To launch the RLBase app, the easiest approach will be to do the following:

1. Clone the repository and cd into it:

git clone https://github.com/Bishop-Laboratory/RLBase.git rlbase
cd rlbase

2. Install R v4.2.0+ and get the renv package

R -e 'if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")'

3. Install getSysReqs

R -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")'
R -e 'remotes::install_github("mdneuzerling/getsysreqs", force=TRUE)'

4. Install system reqs (requires sudo)

REQS=$(Rscript -e 'options(warn = -1); cat(getsysreqs::get_sysreqs("renv.lock"))' | sed s/"WARNING: ignoring environment value of R_HOME"//) \
  && echo $REQS \
  && sudo apt-get install -y $REQS

5. Create the environment (requires renv R package installed):

R -e "renv::restore()"

6. Configure awscli (required for Analyze feature to work; need admin credentials)

aws configure

7. Finally, launch the server:

Rscript app.R