FibroDB

Shiny app for exploring the fibroblast lncRNA-Seq data analyzed by Ilieva et al. 2021.

Note: To generate the data for this app, please see the instructions in preprocess/.

Getting started

To run the app locally, please perform the following steps:

1. Clone the repo

git clone https://github.com/Bishop-Laboratory/FibroDB.git
cd FibroDB/

2. Set up the app environment (requires conda installed)

conda install -c conda-forge mamba -y
mamba env create -f fibrodb.yml --force
conda activate fibrodb
R -e "install.packages('prompter', repos = 'http://cran.us.r-project.org')"

3. Run the app

Rscript runApp.R 5566  # Port number