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ghcr.io/ericsdavis/bioc2023mariner:latest |
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/galaxy/server/tools/interactive/biocworkshop_bioc2023mariner.xml: | ||
useSecret: false | ||
applyToJob: true | ||
applyToSetupJob: true | ||
applyToWeb: true | ||
applyToWorkflow: true | ||
applyToNginx: true | ||
tpl: false | ||
content: | | ||
<tool id="interactivetool_biocworkshop_bioc2023mariner" tool_type="interactive" name="Analyzing and visualizing Hi-C data" version="0.1"> | ||
<description>with mariner and plotgardener packages</description> | ||
<requirements> | ||
<container type="docker">ghcr.io/ericsdavis/bioc2023mariner:latest</container> | ||
</requirements> | ||
<entry_points> | ||
<entry_point name="bioc2023mariner" requires_domain="True"> | ||
<port>8787</port> | ||
</entry_point> | ||
</entry_points> | ||
<environment_variables> | ||
<environment_variable name="DISABLE_AUTH">true</environment_variable> | ||
<environment_variable name="HISTORY_ID">$__history_id__</environment_variable> | ||
<environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable> | ||
<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable> | ||
<environment_variable name="API_KEY" inject="api_key" /> | ||
</environment_variables> | ||
<command detect_errors="aggressive">if [ -f '/home/rstudio/Bioc2023mariner/vignettes/Bioc2023mariner.Rmd' ]; then echo '/home/rstudio/Bioc2023mariner/vignettes/Bioc2023mariner.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/Bioc2023mariner.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init</command> | ||
<inputs> | ||
</inputs> | ||
<outputs> | ||
</outputs> | ||
<tests> | ||
</tests> | ||
<help>This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/EricSDavis/Bioc2023mariner.</help> | ||
</tool> |
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