Python package for the equilibrium analysis of Ref. 1.
It includes a module implementing the equilibrium model, as well as a module for creating plots with this model, as well as plots from finite element calculations output from a related package (elastic-rings) and plots from Monte Carlo simulations from another related package (ActinRingsMC.jl).
Some example scripts for creating plots are provided in the scripts directory.
This package was developed and used on Linux. It is available on the PyPI respository. It can be installed by running
pip install actinrings
If you do not have root access and it does not automatically default to installing locally, the --user flag may be used.
To install directly from this repository, run
python -m build
pip install dist/actinrings-[current version]-py3-none-any.whl
To run the above, it may be necessary to update a few packages:
python3 -m pip install --upgrade pip setuptools wheel
For more information on building and installing python packages, see the documentation from the Python Packaging Authority.
[1] A. Cumberworth and P. R. ten Wolde, Constriction of actin rings by passive crosslinkers, arXiv:2203.04260 [physics.bio-ph].
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