v1.2.0

FASTX v1.2.0

Diff since v1.1.3

[1.2.0] - 2021-07-13

Added:

• header(::Union{FASTA.Record, FASTQ.Record}) returns the full header line.
• sequence_iter(::Union{FASTA.Record, FASTQ.Record}) returns a no-copy iterator over the sequence. If the record is mutated, this iterator will be in an invalid state.
• quality_iter(::FASTQ.Record) - same as above, but for PHRED quality.
• New type FASTQRead stores the same data as a FASTQ record, but in a Julia native format instead of a ASCII-encoding byte vector. (PR #35)

Bugfixes

• Allow trailing newlines after last record of FASTA and FASTQ
• Fix parser FSM ambiguity
• Fix off-by-one error in line counting of FASTQ files
• Various small fixes to the internal parsing regex
• Writers are now parametric and buffered for increased writing speed
• Fixed a bug where Windows-style newlines would break the parser