fix imports (#270)

BioImage-Archive · Dec 13, 2024 · d751833 · d751833
1 parent 5306a38
commit d751833
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diff --git a/bia-ingest/README.md b/bia-ingest/README.md
@@ -15,8 +15,13 @@ $ poetry run biaingest ingest <LIST OF STUDY ACCESSION IDs>
 ```
 E.g:
 ```sh
-$ poetry run biaingest ingest S-BIAD1285
+$ poetry run biaingest ingest S-BIAD1285 S-BIAD1316
 ```
+Or can input a file of newline separated accesssion ids with -f:
+```sh
+$ poetry run biaingest ingest -f input_files/ingested_submissions
+```
+
 By default this will create objects on disk (`--persistence-mode disk`).
 This creates the following structure (using S-BIAD325 as an example):
 ```sh

diff --git a/bia-ingest/pyproject.toml b/bia-ingest/pyproject.toml
@@ -10,7 +10,6 @@ packages = [{include = "bia_ingest"}]
 [tool.poetry.dependencies]
 python = "^3.10,<3.12"
 requests = "^2.31.0"
-pytest = "^7.0"
 bia-shared-datamodels = { path = "../bia-shared-datamodels", develop = true }
 bia-integrator-api = { path = "../clients/python", develop = true }
 bia-test-data = { path = "../bia-test-data", develop = true }
@@ -25,7 +24,7 @@ biaingest = "bia_ingest.cli:app"
 
 [tool.poetry.group.dev.dependencies]
 ipython = "^8.22.1"
-pyqt6 = "^6.8.0"
+pytest = "^7.0"
 
 [build-system]
 requires = ["poetry-core"]