Propose only from file refs of datasets with biosample, image acquisi… #2201
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: [pull_request, push] | |
| jobs: | |
| ci-test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11"] | |
| poetry-version: ["1.4.2"] | |
| os: [ubuntu-20.04, macos-latest, windows-latest] | |
| project: | |
| [ | |
| bia-ingest, | |
| bia-assign-image, | |
| bia-shared-datamodels, | |
| core, | |
| ] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| working-directory: ${{ matrix.project }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Run image | |
| uses: abatilo/actions-poetry@v2 | |
| with: | |
| poetry-version: ${{ matrix.poetry-version }} | |
| - name: View poetry --help | |
| run: poetry --help | |
| - name: Poetry env setup | |
| run: poetry env use python | |
| - name: Poetry install | |
| run: poetry install | |
| - name: Check to see if poetry can build | |
| run: poetry build | |
| - name: Run pytest | |
| run: poetry run pytest | |
| ci-make: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11"] | |
| poetry-version: ["1.4.2"] | |
| # NOTE - WE DO NOT TEST ON MAC/WINDOWS!! | |
| # The current tests dockerize the test runner, so there is not much point on testing across platforms | |
| # TODO: we want to change this to more closely follow how users actually run tests (setting up API first, then running tests) | |
| # Ticket: https://app.clickup.com/t/8697kxtgx | |
| os: [ubuntu-20.04] | |
| project: | |
| [ | |
| bia-export, | |
| ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v1 # Set up Docker Buildx for building and pushing Docker images | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 # Cache Docker layers to speed up subsequent builds | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: run makefile | |
| run: make ${{matrix.project}}.test |