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Added comment for parameters included
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DeniseSl22 committed Dec 20, 2023
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7 changes: 7 additions & 0 deletions Output/RDF_Kin_Data_2022-Dec.ttl
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@prefix bioregistry: <https://bioregistry.io/oboinowl:> .

wdt:P2076 sio:SIO_000028 wd:Q25267 .
#Temperature hasUnit degree Celcius (Wikidata Q25267)
SER:hasKm sio:SIO_000028 wd:Q105687351 .
#Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351)
SER:hasKm sio:SIO_000028 wd:Q61751178 .
#Michaelis constant a Michaelis constant (Wikidata Q61751178)
SER:hasKcat sio:SIO_000028 wd:Q6137407 .
#Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407)
SER:hasKcat sio:SIO_000028 wd:Q899698 .
#Turnover Number a Turnover Number (Wikidata Q899698)
SER:hasKcatKm sio:SIO_000028 wd:Q116486875 .
#Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875)
SER:hasKcatKm a wd:Q7575016 .

#Specificity constant a Specificity constant (Wikidata Q7575016)
SER:1
dc:identifier SER:16953-P45381-14167 ;
sio:SIO_000028 SER:1_substrate, SER:1_enzyme, SER:1_reaction ;
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7 changes: 7 additions & 0 deletions createRDFKinData.py
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# #Second, print the information on units (for measurements) SIO_000221
## Temp wdt:P2076
RDF_Kin_data.write("wdt:P2076 sio:SIO_000028 wd:Q25267 . \n".encode()) #Temperature hasUnit degree Celcius (Wikidata Q25267)
RDF_Kin_data.write("#Temperature hasUnit degree Celcius (Wikidata Q25267) \n".encode()) #Print comment for clarity
## Km SER:hasKm ; Q61751178
RDF_Kin_data.write("SER:hasKm sio:SIO_000028 wd:Q105687351 . \n".encode()) #Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351)
RDF_Kin_data.write("#Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351) \n".encode()) #Print comment for clarity
RDF_Kin_data.write("SER:hasKm sio:SIO_000028 wd:Q61751178 . \n".encode()) #Michaelis constant a Michaelis constant (Wikidata Q61751178)
RDF_Kin_data.write("#Michaelis constant a Michaelis constant (Wikidata Q61751178) \n".encode()) #Print comment for clarity
## KCat SER:hasKcat
RDF_Kin_data.write("SER:hasKcat sio:SIO_000028 wd:Q6137407 . \n".encode()) #Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407)
RDF_Kin_data.write("#Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407) \n".encode()) #Print comment for clarity
RDF_Kin_data.write("SER:hasKcat sio:SIO_000028 wd:Q899698 . \n".encode()) #Turnover Number a Turnover Number (Wikidata Q899698)
RDF_Kin_data.write("#Turnover Number a Turnover Number (Wikidata Q899698) \n".encode()) #Print comment for clarity
## Kcat/Km SER:hasKcatKm
RDF_Kin_data.write("SER:hasKcatKm sio:SIO_000028 wd:Q116486875 . \n".encode()) #Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875)
RDF_Kin_data.write("#Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875) \n".encode()) #Print comment for clarity
RDF_Kin_data.write("SER:hasKcatKm a wd:Q7575016 . \n\n".encode()) #Specificity constant a Specificity constant (Wikidata Q7575016)
RDF_Kin_data.write("#Specificity constant a Specificity constant (Wikidata Q7575016) \n".encode()) #Print comment for clarity

## Ph has no unit.

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