Added first validation of enzymes

.github/workflows/GroovyScriptTest.yml

@@ -22,4 +22,5 @@ jobs:
 
       - name: Generate the Shex validation reports
         run: |
-          groovy validate.groovy
+          groovy validate.groovy InteractionData http://vocabularies.wikipathways.org/wp#InteractionData
+          groovy validate.groovy Enzyme http://vocabularies.wikipathways.org/wp#Protein

shapes/Enzyme.shex

@@ -0,0 +1,15 @@
+BASE <http://bigcat-um.github.io/KinRDF/shapes#>
+PREFIX : <http://bigcat-um.github.io/KinRDF/shapes#>
+
+PREFIX dc:    <http://purl.org/dc/elements/1.1/>
+PREFIX dct:   <http://purl.org/dc/terms/>
+PREFIX foaf:  <http://xmlns.com/foaf/0.1/>
+PREFIX rdfs:  <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX sbd:   <https://www.sbd4nano.eu/rdf/#>
+PREFIX xsd:   <http://www.w3.org/2001/XMLSchema#>
+PREFIX wp:    <http://vocabularies.wikipathways.org/wp#>
+PREFIX sio:   <http://semanticscience.org/resource/>
+
+:Enzyme {
+  a [ wp:Protein ]
+}

shapes/InteractionData.shex

@@ -14,5 +14,10 @@ PREFIX sio:   <http://semanticscience.org/resource/>
   a [ wp:InteractionData ] ;
   dc:identifier IRI {1} ;
   sio:SIO_000008 IRI {1} ;
+  sio:SIO_000028 @:Enzyme {1} ;
   sio:SIO_000028 IRI +
 }
+
+:Enzyme {
+  a [ wp:Protein ]
+}

validate.groovy

@@ -7,15 +7,16 @@ workspaceRoot = "."
 rdf = new net.bioclipse.managers.RDFManager(workspaceRoot);
 
 file = "/Output/RDF_Kin_Data_2022-Dec.ttl"
-clazz = "InteractionData"
+clazz = args[0]
+type = args[1]
 
 store = rdf.createInMemoryStore(true);
 store = rdf.importFile(store, "${file}", "TURTLE")
 report = rdf.validateAllOfType(
   store,
   "/shapes/${clazz}.shex",
   "http://bigcat-um.github.io/KinRDF/shapes#${clazz}",
-  "http://vocabularies.wikipathways.org/wp#${clazz}"
+  "${type}"
 )
 
 println "{"