Defining substrates as a molecular entity #27

	name: Python Script Test

	on:
	workflow_dispatch:
	push:
	paths:
	- KineticsData/*
	- TestData/*
	- ValidateData/*
	- createRDFKinData.py

	# Sets permissions of the GITHUB_TOKEN to push results to GitHub if required
	permissions:
	contents: read
	pages: write
	id-token: write

	jobs:
	CreateCuratedRDF:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	# step 1: checkout the repository
	- uses: actions/checkout@v3
	# step 2: define Python version to run script with
	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: '3.10'
	# step 3: run the script in bash
	- name: run script in bash
	run: \|
	## Check if python is activated:
	which python
	## Check version of Python
	python3 --version
	##Update pip install
	pip install --upgrade pip
	##Install library to read xlsx files:
	pip install openpyxl
	ls
	python createRDFKinData.py
	echo "script run successful"

	ValidateCuratedRDF:
	runs-on: ubuntu-latest
	needs: CreateCuratedRDF
	steps:
	# step 1: checkout the repository
	- uses: actions/checkout@v3
	# step 2: Download and run the RDF validator
	- name: Turtle Validator
	run: \|
	npm install -g turtle-validator
	ttl Output/RDF_Kin_Data_2022-Dec.ttl
	ttl Output/RDF_Kin_Data_2022-Dec.ttl > validationLog2022-Dec.txt
	FILENAME=validationLog2022-Dec.txt
	if grep -q . "${FILENAME}"; then
	echo "File is not empty"
	else
	echo "File is empty"
	fi

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