An EarthCube Integrative Activities project: "Advancing Biogeoscience Community Standards and Cyberinfrastructure via Critical Zone Domain Engagement in Synthesis Science". This project is a close BiG-CZ partner.
- Project page at EarthCube.org
- Main NSF Award (#1541047) page
- Also strongly linked to a NEON NSF Award (#1550920) led by the same team: EAGER-NEON: Collaborative Research: Formation of a NEON Microbial Metagenomics Data Synthesis Working Group
- Mayorga et al, Cross-Site Soil and Microbial Ecology Cyberinfrastructure for the CZIMEA EarthCube Project (pdf). Poster presented at the CUAHSI Conference on Hydroinformatics in Tuscaloosa, AL, July 2017.
- Mayorga et al, Cross-Site Soil and Microbial Ecology Cyberinfrastructure for the CZIMEA Project (pdf). Poster presented at the EarthCube All-Hands meeting in Seattle, June 2017.
- Cross-CZO sample processing workflow diagram (pdf)
- CZIMEA ODM2 Admin instance (development version) hosted on the CUAHSI Water Data Center cloud. This is a prototype that is being enhanced and populated with more (meta)data fairly regularly. Read-only access available upon request. A "production" versions exists BUT it's not being actively maintained yet, until development is more mature.
- Initial cross-CZO soils sampling metadata loading into ODM2 (processing workflow diagram, and initial data-loading code).
- ODM2-Admin issue discussing data loading options
- odm2api jupyter notebooks demoing remote
odm2apiinteractions with ODM2 PostgreSQL databases behind ODM2-Admin instances.
- Brewer, Tess E., Emma L. Aronson, Keshav Arogyaswamy, Sharon A. Billings, Jon K. Botthoff, Ashley N. Campbell, Nicholas C. Dove, Dawson Fairbanks, Rachel E. Gallery, Stephen C. Hart, Jason Kaye, Gary King, Geoffrey Logan, Kathleen A. Lohse, Mia R. Maltz, Emilio Mayorga, Caitlin O’Neill, Sarah M. Owens, Aaron Packman, Jennifer Pett-Ridge, Alain F. Plante, Daniel D. Richter, Whendee L. Silver, Wendy H. Yang, Noah Fierer. 2019. Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons. mBio 10(5), e01318-19, doi:10.1128/mBio.01318-19
- Dove, N. C., Arogyaswamy, K., Billings, S. A., Botthoff, J. K., Carey, C. J., Cisco, C., et al. (2020). Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity. Environmental Research Letters 15(10), 1040a1, doi:10.1088/1748-9326/abb0b3
- ODM2 web site, ODM2 Core schema diagram and ODM2 Controlled Vocabularies
- ODM2 Admin
- System for Earth Sample Registration (SESAR). IGSN registration and management.
- BiG-CZ project (Software System for Integration and Analysis of Bio- and Geoscience Data in the Critical Zone)
- Notes from Emilio on broader soils data sets
- Genomic Standards Consortium (GSC) MiXS, including information on the "environmental packages"
- Linking Environmental Data and Samples Symposium, 29 May - 2 June 2017, Canberra, Australia
- Planet Microbe, EarthCube building block project that builds on the EarthCube ECOGEO RCN project.