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Fix Tracking Layer #286

Merged
merged 23 commits into from
Dec 15, 2023
Merged

Fix Tracking Layer #286

merged 23 commits into from
Dec 15, 2023

Commits on Dec 13, 2023

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  2. Use map_array function again in generate_cluster_image() function

    * The generate_cluster_tracks() function did not work with the version without map_array
    * A unit test is added to proof this
    stefanhahmann committed Dec 13, 2023
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  7. Replace pyclesperanto by pyclesperanto-prototype in test_and_deploy.y…

    …ml to enable related unit test
    stefanhahmann committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. Reverting changes to generate_cluster_image, combining tests in one f…

    …ile and removing tests that are covered elsewhere
    Cryaaa committed Dec 14, 2023
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  3. Adapt unit test test_generate_cluster_tracks()

    * The unit test before had two time frames containing each a 3d image. Both 3d images contained *all* labels that occur in the full timelapse
    * The unit test now has two time frames containing each a 3d image. The 3d image of the first timeframe now does not contain all labels that occur in the full timelapse.
    stefanhahmann committed Dec 14, 2023
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  4. Replace int(np.max(label_image)) with len(predictionlist) in generate…

    …_cluster_image function
    
    * int(np.max(label_image)) could lead to an index out of bounds error, in case where a single timeframe does not contain all labels of the complete timelapse
    stefanhahmann committed Dec 14, 2023
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  7. Add generate_cluster_image_old again as generate_cluster_image and re…

    …name generate_cluster_image to generate_cluster_image_new
    stefanhahmann committed Dec 14, 2023
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  12. probably python max is faster as it does not need to convert the list…

    … to an numpy array first.
    thorstenwagner committed Dec 14, 2023
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