Update install_r.sh + Add cargo to Dockerfile

Dockerfile

@@ -35,6 +35,7 @@ RUN echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula sele
   ccache \
   gfortran \
   netbase \
+  cargo \
   zip \
   unzip \
   xclip \
@@ -121,7 +122,7 @@ RUN apt-get update &&\
   && rm -rf /var/lib/apt/lists/*
 
 # Set PATH for user installed python packages
-ENV PATH="/home/vscode/.local/bin:${PATH}"
+ENV PATH="/home/${USERNAME}/.local/bin:${PATH}"
 
 # Install Latex
 COPY install_scripts/install_latex.sh /tmp/install_latex.sh
@@ -135,17 +136,19 @@ RUN chmod +x /tmp/install_latex.sh &&\
   && tlmgr option -- srcfiles 0 \
   && tlmgr install \
   $(grep -o '^[^#]*' /tmp/latex_packages.txt | tr '\n' ' ') \
-  && chown --recursive $USERNAME:$USERNAME /usr/local/texlive
+  && chown --recursive $USERNAME:$USERNAME /usr/local/texlive \
+  && cargo install tex-fmt
 
-# Set Latex Path
+# Set Latex Paths
 ENV PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}"
+ENV PATH="/home/${USERNAME}/.cargo/bin:${PATH}"
 
 # Install R
 ENV R_VERSION=4.4.1
 
 # Set RSPM snapshot see:
 # https://packagemanager.posit.co/client/#/repos/cran/setup?r_environment=other&snapshot=2024-10-01&distribution=ubuntu-22.04
-ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-10-01
+ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/noble/2024-10-01
 
 COPY install_scripts/install_r.sh /tmp/install_r.sh
 COPY package_lists/r_packages.txt /tmp/r_packages.txt

install_scripts/install_r.sh

@@ -1,9 +1,14 @@
 #!/bin/bash
 
-echo "deb http://cloud.r-project.org/bin/linux/ubuntu noble-cran40/" >> /etc/apt/sources.list
-gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
-gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | apt-key add -
-apt-get update
+apt update -qq
+# install two helper packages we need
+apt install -y --no-install-recommends software-properties-common dirmngr
+# add the signing key (by Michael Rutter) for these repos
+# To verify key, run gpg --show-keys /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc 
+# Fingerprint: E298A3A825C0D65DFD57CBB651716619E084DAB9
+wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
+# add the R 4.X repo from CRAN
+add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu noble-cran40/"
 
 apt-get update
 
@@ -16,7 +21,6 @@ RUNDEPS="ca-certificates \
       libxml2-dev \
       vim-tiny \
       wget \
-      dirmngr \
       libmagick++-dev \
       libpoppler-cpp-dev \
       libudunits2-dev \
@@ -28,7 +32,6 @@ RUNDEPS="ca-certificates \
       libfribidi-dev \
       curl \
       libgit2-dev \
-      pandoc-citeproc \
       qpdf"
 
 # Install R amd dependencies
@@ -59,7 +62,7 @@ echo  'options(HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRv
 Rscript -e "install.packages('docopt', repos= '$R_REPOS')"
 
 # Install alternative r console
-pip3 install -U --no-cache-dir radian
+pip3 install --user --no-cache-dir --break-system-packages radian
 
 # R packages on RSPM
 install2.r --error --skipinstalled --ncpus 32 \
@@ -70,7 +73,7 @@ installGithub.r \
     $(grep -o '^[^#]*' tmp/r_packages_github.txt | tr '\n' ' ')
 
 # Miniconda for Refinitiv and resp. python dependenies 
-R -e "Refinitiv::install_eikon()"
+# R -e "Refinitiv::install_eikon()"
 
 chown --recursive $USERNAME:$USERNAME /usr/local/lib/R/site-library