Update README.md

Benson-Genomics-Lab · Jun 29, 2020 · 260de30 · 260de30
1 parent e3743b5
commit 260de30
Showing 1 changed file with 21 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -120,11 +120,30 @@ test_seqs.fasta.s3.2.5.7.80.10.50.2000.1.txt.html
 test_seqs.fasta.s4.2.5.7.80.10.50.2000.1.html
 test_seqs.fasta.s4.2.5.7.80.10.50.2000.1.txt.html
 ```
-Open the summary file in a browser.  It will point to the four .html files (without the .txt).  Each of those files contains a table describing one TR.  For example:
+Open the summary file in a browser.  It will point to the four .html files (without the .txt).  Each of those files contains a table describing one TR.  Below are the tables as they should appear.  
 
+**test_seqs.fasta.s1.2.5.7.80.10.50.2000.1.html**
 <TABLE BORDER=1 CELLSPACING=0 CELLPADDING=0>
 <TR><TD WIDTH=140><CENTER>Indices</CENTER></TD><TD WIDTH=80><CENTER>Period<BR>Size </CENTER></TD><TD WIDTH=70><CENTER>Copy<BR>Number</CENTER></TD><TD WIDTH=70><CENTER>Consensus<BR>Size</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Matches</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Indels</CENTER></TD><TD WIDTH=60><CENTER>Score</CENTER></TD><TD WIDTH=40><CENTER>A</CENTER></TD><TD WIDTH=40><CENTER>C</CENTER></TD><TD WIDTH=40><CENTER>G</CENTER></TD><TD WIDTH=40><CENTER>T</CENTER></TD><TD WIDTH=70><CENTER>Entropy<BR>(0-2)</CENTER></TD></TR>
-<TR><TD><CENTER><A HREF="test_seqs.fasta.s1.2.5.7.80.10.50.2000.1.txt.html#1--35,7,5.0,7,1">1--35</A></CENTER></TD><TD><CENTER>7</CENTER></TD><TD><CENTER>5.0</CENTER></TD><TD><CENTER>7</CENTER></TD><TD><CENTER>100</CENTER></TD><TD><CENTER>0</CENTER></TD><TD><CENTER>70</CENTER></TD><TD><CENTER>14</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>1.95</CENTER></TD></TR>
+<TR><TD><CENTER>1--35</CENTER></TD><TD><CENTER>7</CENTER></TD><TD><CENTER>5.0</CENTER></TD><TD><CENTER>7</CENTER></TD><TD><CENTER>100</CENTER></TD><TD><CENTER>0</CENTER></TD><TD><CENTER>70</CENTER></TD><TD><CENTER>14</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>1.95</CENTER></TD></TR>
+</TABLE>
+
+**test_seqs.fasta.s2.2.5.7.80.10.50.2000.1.html**
+<TABLE BORDER=1 CELLSPACING=0 CELLPADDING=0>
+<TR><TD WIDTH=140><CENTER>Indices</CENTER></TD><TD WIDTH=80><CENTER>Period<BR>Size </CENTER></TD><TD WIDTH=70><CENTER>Copy<BR>Number</CENTER></TD><TD WIDTH=70><CENTER>Consensus<BR>Size</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Matches</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Indels</CENTER></TD><TD WIDTH=60><CENTER>Score</CENTER></TD><TD WIDTH=40><CENTER>A</CENTER></TD><TD WIDTH=40><CENTER>C</CENTER></TD><TD WIDTH=40><CENTER>G</CENTER></TD><TD WIDTH=40><CENTER>T</CENTER></TD><TD WIDTH=70><CENTER>Entropy<BR>(0-2)</CENTER></TD></TR>
+<TR><TD><CENTER>1--84</CENTER></TD><TD><CENTER>12</CENTER></TD><TD><CENTER>7.0</CENTER></TD><TD><CENTER>12</CENTER></TD><TD><CENTER>100</CENTER></TD><TD><CENTER>0</CENTER></TD><TD><CENTER>168</CENTER></TD><TD><CENTER>16</CENTER></TD><TD><CENTER>41</CENTER></TD><TD><CENTER>25</CENTER></TD><TD><CENTER>16</CENTER></TD><TD><CENTER>1.89</CENTER></TD></TR>
+</TABLE>
+
+**test_seqs.fasta.s3.2.5.7.80.10.50.2000.1.html**
+<TABLE BORDER=1 CELLSPACING=0 CELLPADDING=0>
+<TR><TD WIDTH=140><CENTER>Indices</CENTER></TD><TD WIDTH=80><CENTER>Period<BR>Size </CENTER></TD><TD WIDTH=70><CENTER>Copy<BR>Number</CENTER></TD><TD WIDTH=70><CENTER>Consensus<BR>Size</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Matches</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Indels</CENTER></TD><TD WIDTH=60><CENTER>Score</CENTER></TD><TD WIDTH=40><CENTER>A</CENTER></TD><TD WIDTH=40><CENTER>C</CENTER></TD><TD WIDTH=40><CENTER>G</CENTER></TD><TD WIDTH=40><CENTER>T</CENTER></TD><TD WIDTH=70><CENTER>Entropy<BR>(0-2)</CENTER></TD></TR>
+<TR><TD><CENTER>1--1225</CENTER></TD><TD><CENTER>35</CENTER></TD><TD><CENTER>35.0</CENTER></TD><TD><CENTER>35</CENTER></TD><TD><CENTER>100</CENTER></TD><TD><CENTER>0</CENTER></TD><TD><CENTER>2450</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>22</CENTER></TD><TD><CENTER>20</CENTER></TD><TD><CENTER>28</CENTER></TD><TD><CENTER>1.98</CENTER></TD></TR>
+</TABLE>
+
+**test_seqs.fasta.s4.2.5.7.80.10.50.2000.1.html**
+<TABLE BORDER=1 CELLSPACING=0 CELLPADDING=0>
+<TR><TD WIDTH=140><CENTER>Indices</CENTER></TD><TD WIDTH=80><CENTER>Period<BR>Size </CENTER></TD><TD WIDTH=70><CENTER>Copy<BR>Number</CENTER></TD><TD WIDTH=70><CENTER>Consensus<BR>Size</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Matches</CENTER></TD><TD WIDTH=70><CENTER>Percent<BR>Indels</CENTER></TD><TD WIDTH=60><CENTER>Score</CENTER></TD><TD WIDTH=40><CENTER>A</CENTER></TD><TD WIDTH=40><CENTER>C</CENTER></TD><TD WIDTH=40><CENTER>G</CENTER></TD><TD WIDTH=40><CENTER>T</CENTER></TD><TD WIDTH=70><CENTER>Entropy<BR>(0-2)</CENTER></TD></TR>
+<TR><TD><CENTER>1--10000000</CENTER></TD><TD><CENTER>125</CENTER></TD><TD><CENTER>80000.0</CENTER></TD><TD><CENTER>125</CENTER></TD><TD><CENTER>100</CENTER></TD><TD><CENTER>0</CENTER></TD><TD><CENTER>20000000</CENTER></TD><TD><CENTER>32</CENTER></TD><TD><CENTER>26</CENTER></TD><TD><CENTER>13</CENTER></TD><TD><CENTER>27</CENTER></TD><TD><CENTER>1.94</CENTER></TD></TR>
 </TABLE>
 
 ## Quick Start ##