GSE147507 SARS-Cov-2 Dataset from tenOever lab at the Icahn School of Medicine at Mt. Sinai
See also the associated bioRxiv submission: SARS-CoV-2 launches a unique transcriptional signature from in vitro, ex vivo, and in vivo systems
This is a breif analysis of SARS-CoV-2 infection of some lung cell lines, primary human bronchial epithelial cells (NHBE), and Lung adenocarcinoma (A549).
Differential gene expression was determined using the Bioconductor package, limma, and represented as a Volcano plot, labeling the first 50 differentially expressed genes.
There are three comparisons:
Primary human bronchial epithelial cells (NHBE) infected with SARS-CoV-2 vs mock infection (three samples per group)
Here are the top 100 genes in a report from string-db, indicating inflammation, cellular recruitment, as well as an interferon response
Lung adenocarcinoma cells (A549) infected with SARS-CoV-2 vs mock infection (three samples per group)
Lung adenocarcinoma cells (A549) infected with RSV vs mock infection (two samples per group)
