genemania web

5.2-Module5_genenmania_web_lab.Rmd

@@ -138,7 +138,7 @@ The top functions predicted by GeneMANIA for GRN were related to lysosome and va
 
 ### Exercise 1 - STEP 11 (save an image) 	
 
-<img src="./Module6/genemania/images/GM10.png" alt="start" width="60%" />
+<img src="./Module6/genemania/images/GM35_2.png" alt="start" width="60%" />
 
 
 **Notes** about biological interpretation of the results: 
@@ -371,13 +371,9 @@ Drug-interactions and miRNA-target-predictions nodes are displayed in gray. The
 
 <img src="./Module6/genemania/images/GM29.png" alt="start" width="60%" />
 
-### Exercise 3 - STEP 4
+### Exercise 3 - STEP 4/ STEP5
 
-<img src="./Module6/genemania/images/GM30.png" alt="start" width="60%" />
-
-### Exercise 3 - STEP 5
-
-<img src="./Module6/genemania/images/GM31.png" alt="start" width="60%" />
+<img src="./Module6/genemania/images/GM31_v2.png" alt="start" width="60%" />
 
 ### Exercise 3 - STEPS 6 
 
@@ -392,7 +388,9 @@ Drug-interactions and miRNA-target-predictions nodes are displayed in gray. The
 
 ### Exercise 3 - STEP 8
 
-<img src="./Module6/genemania/images/GM35.png" alt="start" width="60%" />
+<img src="./Module6/genemania/images/GM35_2.png" alt="start" width="60%" />
+
+
 
 <img src="./Module6/genemania/images/GM36.png" alt="start" width="60%" />
 

docs/genemania_web.html

@@ -762,7 +762,7 @@ <h4>Force directed layout<a href="genemania_web.html#force-directed-layout" clas
 </div>
 <div id="exercise-1---step-11-save-an-image" class="section level3 hasAnchor">
 <h3>Exercise 1 - STEP 11 (save an image)<a href="genemania_web.html#exercise-1---step-11-save-an-image" class="anchor-section" aria-label="Anchor link to header"></a></h3>
-<p><img src="Module6/genemania/images/GM10.png" alt="start" width="60%" /></p>
+<p><img src="Module6/genemania/images/GM35_2.png" alt="start" width="60%" /></p>
 <p><strong>Notes</strong> about biological interpretation of the results:</p>
 <p><strong>A paper describing the interaction between GRN and SORT1 and demonstrates how finding related genes could be relevant for elaborating therapy:</strong></p>
 <p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929086/">Targeted manipulation of the sortilin–progranulin axis rescues progranulin haploinsufficiency. Lee et al. Hum Mol Genet. 2014 March 15; 23(6): 1467–1478. PMCID:PMC3929086</a><br>
@@ -1006,7 +1006,7 @@ <h3>Exercise 3 - STEP 4<a href="genemania_web.html#exercise-3---step-4" class="a
 </div>
 <div id="exercise-3---step-5" class="section level3 hasAnchor">
 <h3>Exercise 3 - STEP 5<a href="genemania_web.html#exercise-3---step-5" class="anchor-section" aria-label="Anchor link to header"></a></h3>
-<p><img src="Module6/genemania/images/GM31.png" alt="start" width="60%" /></p>
+<p><img src="Module6/genemania/images/GM31_v2.png" alt="start" width="60%" /></p>
 </div>
 <div id="exercise-3---steps-6" class="section level3 hasAnchor">
 <h3>Exercise 3 - STEPS 6<a href="genemania_web.html#exercise-3---steps-6" class="anchor-section" aria-label="Anchor link to header"></a></h3>
@@ -1019,7 +1019,7 @@ <h3>Exercise 3 - STEP 7<a href="genemania_web.html#exercise-3---step-7" class="a
 </div>
 <div id="exercise-3---step-8" class="section level3 hasAnchor">
 <h3>Exercise 3 - STEP 8<a href="genemania_web.html#exercise-3---step-8" class="anchor-section" aria-label="Anchor link to header"></a></h3>
-<p><img src="Module6/genemania/images/GM35.png" alt="start" width="60%" /></p>
+<p><img src="Module6/genemania/images/GM35_2.png" alt="start" width="60%" /></p>
 <p><img src="Module6/genemania/images/GM36.png" alt="start" width="60%" /></p>
 </div>
 <div id="exercise-3---step-9" class="section level3 hasAnchor">