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v2.1.2
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guoweilong committed Jun 7, 2017
1 parent ca54c22 commit b87080f
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -255,7 +255,7 @@ Module to map reads on 3-letter converted genome.
CH sites)>0.8 and #(mCH sites)>5, then tag XS:i:1; or
else tag XS:i:0. [Default: 0.5,5]
--XSteve Filter definition for tag XS, proposed by Prof. Steve
Jacobson, reads with at least 3 successive mCHH will
Jacobsen, reads with at least 3 successive mCHH will
be labeled as XS:i:1,useful for plant genome, which
have high mCHG level. Will override --XS option.
-M FileName, --multiple-hit=FileName
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2 changes: 1 addition & 1 deletion bs_seeker2-align.py
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Expand Up @@ -92,7 +92,7 @@
" or else tag XS:i:0. [Default: %default]", default = "0.5,5") # added by weilong
#
opt_group.add_option("--XSteve", action="store_true", dest="XSteve",
help="Filter definition for tag XS, proposed by Prof. Steve Jacobson, "
help="Filter definition for tag XS, proposed by Prof. Steve Jacobsen, "
"reads with at least 3 successive mCHH will be labeled as XS:i:1,"
"useful for plant genome, which have high mCHG level. "
"Will override --XS option.", default = False) # added by weilong
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