BioImaging And Optics Platform (BIOP)
- 66 followers
- Lausanne, Switzerland
- https://biop.epfl.ch
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qupath-extension-cellpose
qupath-extension-cellpose Publican extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
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ijp-imagetoatlas
ijp-imagetoatlas PublicABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
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ijl-utilities-wrappers
ijl-utilities-wrappers PublicWrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
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qupath-extension-warpy
qupath-extension-warpy PublicImgLib2 RealTransform brought to QuPath
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qupath-groovy-python-runner
qupath-groovy-python-runner PublicA proof of concept to run python segmentations and recovering the results within QuPath
Groovy 19
Repositories
- qupath-extension-spotiflow Public
An extension that wraps a Spotiflow environment such that WSI can be analyzed using Spotiflow through QuPath.
BIOP/qupath-extension-spotiflow’s past year of commit activity - qupath-extension-cellpose Public
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
BIOP/qupath-extension-cellpose’s past year of commit activity - ijab-biop-channel-tools Public
Tools to ease propagation of channel settings (B&C, LUT) to many images Includes super montage options See https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/imagej_tools/ijab-biop_channel_tools/
BIOP/ijab-biop-channel-tools’s past year of commit activity - qupath-extension-biop-omero Public Forked from qupath/qupath-extension-omero-web
QuPath extension to work with images through OMERO's Java API (raw)
BIOP/qupath-extension-biop-omero’s past year of commit activity
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