90 cli next steps #216

	name: Python CI

	on:
	push:
	branches: [develop]
	pull_request:
	branches: [main, develop]

	jobs:
	run-ci:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ['3.10', '3.11', '3.12']

	steps:
	- name: Checkout code
	uses: actions/checkout@v3
	with:
	submodules: true # This ensures submodules are checked out - name: Checkout code

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python3 -m pip install --upgrade pip
	python3 -m pip install --editable .[test,docs]
	python3 -m pip install --editable ./submodules/phenopacket_mapper # Install the submodule package

	- name: Run tests with pytest
	run: \|
	pytest

Provide feedback