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add images as zip
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engs1258 committed Jun 4, 2023
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16 changes: 8 additions & 8 deletions biomedia-notebooks-0-intro/biomedia_intro_00_read_image.ipynb
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},
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{
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{
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{
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"numpy.ndarray"
]
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"execution_count": 9,
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}
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},
{
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"outputs": [
{
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"(362, 457)"
]
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"execution_count": 8,
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"metadata": {},
"output_type": "execute_result"
}
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16 changes: 8 additions & 8 deletions biomedia-notebooks-0-intro/biomedia_intro_02_image_contrast.ipynb
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6 changes: 3 additions & 3 deletions biomedia-notebooks-0-intro/biomedia_intro_04_erosion.ipynb
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"data": {
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KZaKnTlolBqBd5vBwtSVCQE1BY/NdzEECaIcKD006dP+ppUwdwmoKdQC9UeHhZu528LvCyymntG/+v4fA4Ow1gHkIPFTjlMBSWxg4FlAuvW7R3ffsIcwB3JLAA1faF3quCSkCDsC0BJ7KlVJ0fmu1VXe2WUcAdRN4KrXduR+7pQArwiEA+zhLqzLHzjyqucoxp1F/NwDTEHgAgO4JPBU5tYqh2gEA5zGHh26Yv3M/878AVlR4KqFqs5/K1/l2zQWzfICRCTxUTSd9PpPeAe4n8EBHBBqA3QQeGIxQBIxI4KnAuR2QyafsIsgA7OcsrQP2dSACx3LcPRyAKajw7OBqxwDQF4HnxoQnAJifwHOHa77U59QhxJGHGm2PAIeZw7PWSocxcqcOAJcSeGiCoAfANQxpRTvVHdjF9gtwnMAD0DGBmFZNve0OH3haagwM6wDnaKl9g7um7vOGDzyXEj5olW13DJuwY33DytCBp6WjH40Wu7S0DQPc0tCBB0YjOI9BEIb7CTwAnRJw4UuGDTy1HAGd0iBptADgOi48WIGa7gh+93sIW9CWWtoSqM2wFZ5rzBEC9r3nUoFj3x3iNZ79EF7HYn3DvYas8FzTic/ZiNyigTplWZRSNJ6Ns/7GYn3D/VR4oGE6NoDTDFnhuVRPnYuhKuhTT+0UTGnICo8GgZHY3gEGDTyX6KnTUN3pS0/bJsBchg0853QSo3coo//+FuxaR5lp3QGsDRt4TqXDoBXb26rtFuBeQ09aPnTBPx0GLbLdAuw2dOCJ0EHckrAJwFKGDzzsN2fwODRxevM3wQeAqZjDw063CjuXPA8AjhF4AIDuCTzcY+5Tmc+t2qjyADAFgWdAt74zOwAszaTlQdV6Z3aAFpVSHDRWToUHAOiewAMAdE/gAYArGc6qn8DDYi5pEDQiAExB4AEAuifwsKhzKjaqOwBMReABALon8LC4Y5Wbua/2DMB4BB5uwtWeAViSKy1zM8INAEsReGZ26HYKOnwAWIbAM4NT7xnl3isAsAxzeCZ27g0ySyluqgkAMxN4JnJtcBF6AGA+As8EpgorQg8AzEPgAQC6l6oKAEDvVHgAgO4JPABA9wQeAKB7Ag8A0D2BBwDonsADAHTv/wCLwm6zVmtxjgAAAABJRU5ErkJggg==\n",
"text/plain": [
"<Figure size 720x720 with 2 Axes>"
]
Expand All @@ -112,7 +112,7 @@
}
],
"source": [
"selem = disk(9)\n",
"selem = disk(4)\n",
"eroded = erosion(binary, selem)\n",
"plot_comparison(binary, eroded, 'erosion')"
]
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{
"data": {
"text/plain": [
"<matplotlib.image.AxesImage at 0x7fd0a2fa7610>"
"<matplotlib.image.AxesImage at 0x7fbd768014d0>"
]
},
"execution_count": 4,
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{
"data": {
"text/plain": [
"<matplotlib.image.AxesImage at 0x7fd0bd7e82d0>"
"<matplotlib.image.AxesImage at 0x7fe1e596eb50>"
]
},
"execution_count": 4,
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{
"data": {
"text/plain": [
"<matplotlib.image.AxesImage at 0x7fd0bd541890>"
"<matplotlib.image.AxesImage at 0x7fe1e5198650>"
]
},
"execution_count": 6,
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},
{
"cell_type": "code",
"execution_count": 25,
"execution_count": 7,
"metadata": {},
"outputs": [
{
Expand All @@ -163,7 +163,7 @@
"(-0.5, 599.5, 599.5, -0.5)"
]
},
"execution_count": 25,
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
},
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},
{
"cell_type": "code",
"execution_count": 7,
"execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
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},
{
"cell_type": "code",
"execution_count": 8,
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{
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},
{
"cell_type": "code",
"execution_count": 18,
"execution_count": 7,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"<matplotlib.image.AxesImage at 0x7ffe64af8b10>"
"<matplotlib.image.AxesImage at 0x7f94ca15c750>"
]
},
"execution_count": 18,
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
},
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"cell_type": "markdown",
"metadata": {},
"source": [
"### Step 2: Split the dataa into training and testing"
"### Step 2: Split the data into training and testing"
]
},
{
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"name": "stdout",
"output_type": "stream",
"text": [
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" 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0]\n"
"[0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0\n",
" 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0]\n"
]
}
],
Expand Down Expand Up @@ -234,12 +234,12 @@
"text": [
" precision recall f1-score support\n",
"\n",
" 0 0.28 1.00 0.44 17\n",
" 1 1.00 0.20 0.34 54\n",
" 0 0.29 1.00 0.45 17\n",
" 1 1.00 0.24 0.39 54\n",
"\n",
" accuracy 0.39 71\n",
" macro avg 0.64 0.60 0.39 71\n",
"weighted avg 0.83 0.39 0.36 71\n",
" accuracy 0.42 71\n",
" macro avg 0.65 0.62 0.42 71\n",
"weighted avg 0.83 0.42 0.40 71\n",
"\n"
]
}
Expand All @@ -259,16 +259,16 @@
"text": [
"[[0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00\n",
" 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00\n",
" 4.47339517e-04 2.32957183e-02 1.95819141e-01 2.62816611e-01\n",
" 2.98331316e-01 1.73104287e-01 2.85436570e-02 1.76419304e-02\n",
" 1.91579380e+02 8.78789394e+00 1.63707329e-01 1.02947163e-03\n",
" 3.00724549e-02 8.81049601e-01]\n",
" 4.49970625e-04 2.34332023e-02 1.96670249e-01 2.63024850e-01\n",
" 2.99463605e-01 1.73315888e-01 2.68670755e-02 1.67751604e-02\n",
" 1.89886534e+02 8.75123895e+00 1.64136359e-01 1.03390416e-03\n",
" 3.01522951e-02 8.80960990e-01]\n",
" [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00\n",
" 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00\n",
" 5.45597234e-42 1.92254262e-02 2.59227568e-01 1.72663854e-01\n",
" 1.54146533e-01 1.68006024e-01 9.68542342e-02 1.29876364e-01\n",
" 7.56932893e+02 1.84162966e+01 1.07226077e-01 3.25062733e-03\n",
" 3.62447689e-02 8.20119651e-01]]\n"
" 9.49006880e-32 1.85626250e-02 2.52082254e-01 1.74543560e-01\n",
" 1.52487312e-01 1.66945865e-01 1.04295764e-01 1.31082623e-01\n",
" 7.47404010e+02 1.82996874e+01 1.06660864e-01 3.14849220e-03\n",
" 3.55667902e-02 8.22728866e-01]]\n"
]
}
],
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