Refactor to use pyproject.toml

Create publish-to-test-pypi.yml

.github/workflows/coverage.yml

@@ -13,10 +13,10 @@ jobs:
 
     steps:
 
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v1
 
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v1
         with:
           python-version: 3.8
 

.github/workflows/publish-to-test-pypi.yml

@@ -0,0 +1,36 @@
+name: Publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+
+on: push
+
+jobs:
+  build-n-publish:
+    name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+    runs-on: ubuntu-latest
+
+  steps:
+    - uses: actions/checkout@master
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.8
+
+    - name: Install pep517
+      run: >-
+        python -m
+        pip install
+        pep517
+        --user
+
+    - name: Build a binary wheel and a source tarball
+      run: >-
+        python -m
+        pep517.build
+        --source
+        --binary
+        --out-dir dist/
+
+    - name: Publish distribution 📦 to Test PyPI
+      uses: pypa/gh-action-pypi-publish@master
+      with:
+        password: ${{ secrets.test_pypi_password }}
+        repository_url: https://test.pypi.org/legacy/

.github/workflows/python-versions.yml

@@ -15,9 +15,9 @@ jobs:
         python-version: [3.6, 3.7, 3.8]
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v1
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v1
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies

pyproject.toml

@@ -0,0 +1,6 @@
+[build-system]
+requires = [
+  "setuptools >= 40.9.0",
+  "wheel",
+]
+build-backend = "setuptools.build_meta"

seq_dbutils/_version.txt

@@ -0,0 +1 @@
+0.2

setup.cfg

@@ -0,0 +1,47 @@
+[metadata]
+name = seq_dbutils
+version = file: seq_dbutils/_version.txt
+author = Laura Thomson
+author-email = [email protected]
+home-page = https://github.com/BDI-pathogens/seq_dbutils
+description = A package of MySQL database utilities
+license = MIT
+license-file = LICENSE
+platform = any
+classifiers =
+    Programming Language :: Python
+    Programming Language :: Python :: 3
+    Programming Language :: Python :: 3.6
+    Programming Language :: Python :: 3.7
+    Programming Language :: Python :: 3.8
+    Intended Audience :: Developers
+    License :: OSI Approved :: MIT License
+    Topic :: Software Development :: Libraries :: Python Modules
+    Operating System :: OS Independent
+
+[options]
+include_package_data = true
+python_requires = >=3.6, <=3.8
+packages = seq_dbutils
+test_suite = tests
+setup_requires =
+    setuptools
+install_requires =
+    cryptography ~=3.1.1
+    mysql-connector-python ~=8.0.21
+    pandas ~=1.1.3
+    SQLAlchemy ~=1.3.19
+
+[sdist]
+formats = gztar
+
+[bdist_wheel]
+universal = 1
+
+[coverage:run]
+branch = True
+source = seq_dbutils
+
+[flake8]
+max-line-length = 127
+exclude =  .git, .eggs, __pycache__, tests/, docs/, build/, dist/

setup.py

@@ -1,16 +1,4 @@
-from setuptools import setup
+#!/usr/bin/env python
 
-setup(name="seq_dbutils",
-      version="0.1",
-      author="Laura Thomson",
-      author_email="[email protected]",
-      description="A package of MySQL database utilities",
-      packages=["seq_dbutils"],
-      install_requires=["cryptography",
-                        "pandas",
-                        "SQLAlchemy",
-                        "mysql-connector-python"],
-      license="MIT",
-      python_requires='>=3.6',
-      url="https://github.com/BDI-pathogens/seq_dbutils",
-      )
+import setuptools
+setuptools.setup()