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35 Open 131 Closed
35 Open 131 Closed
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Issues list

Update gdc-client to 1.4
#290 opened Jan 28, 2019 by jvivian
@jvivian
Flappy Jenkins test bug
#276 opened Apr 11, 2018 by jvivian
Open Source License
#272 opened Dec 4, 2017 by Georgehe4
Update docker commands for Mango
#271 opened Nov 30, 2017 by Georgehe4
need rtg-tools container
#263 opened Sep 1, 2017 by tpesout
@tpesout
Upgrade SNAP to 1.0dev.100 in progress
#261 opened Aug 30, 2017 by fnothaft
@fnothaft
Add retry to docker push in jenkins
#260 opened Aug 30, 2017 by jvivian
1
latest does not exist
#247 opened Jul 18, 2017 by antonkulaga
1
Refactor spark-and-maven on apache-spark-common enhancement
#244 opened Apr 27, 2017 by fnothaft
@fnothaft
Factor apt-get commands out enhancement
#243 opened Apr 27, 2017 by fnothaft
2
command for dockerized rna-seq 3.2.1 - multiple samples using fastq for input
#242 opened Apr 25, 2017 by hbeale
picardtools needs to specify JAVA_OPTS when invoked
#233 opened Mar 16, 2017 by tpesout
@tpesout
Remove patch that added -M option to bwakit
#205 opened Nov 11, 2016 by jpfeil
Add -M option to run-bwamem
#203 opened Nov 9, 2016 by jpfeil
Invoking tabix and bgzip
#198 opened Oct 18, 2016 by adamnovak
Cross build spark versions enhancement in progress spark/adam
#196 opened Oct 8, 2016 by fnothaft
@fnothaft
Pipeline image labels are wasteful and misleading
#191 opened Sep 23, 2016 by hannes-ucsc
Increase Docker cache hits during build enhancement
#179 opened Sep 9, 2016 by hannes-ucsc
Backup images from quay.io to S3
#175 opened Aug 30, 2016 by hannes-ucsc
Refactor wrapper functionality out of cgl-docker-lib enhancement
#170 opened Aug 23, 2016 by nsjake
Add R to GATK container enhancement
#169 opened Aug 22, 2016 by jpfeil
1
Consider retaining the STAR log in rnaseq-cgl-pipeline enhancement
#167 opened Aug 16, 2016 by hbeale
2
Make oncotator container enhancement
#163 opened Aug 4, 2016 by jpfeil
Explore valid networking modes for toil-appliance containers enhancement
#162 opened Aug 3, 2016 by fnothaft
@cket
1
Clean up build enhancement
#161 opened Aug 3, 2016 by fnothaft
6 tasks
@fnothaft
1
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