refactor(core/catalog): switch from TinyDB to SQLAlchemy #431
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: [] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[dev]" | |
| pip install -e ".[docs]" | |
| # Output dependency versions | |
| pip freeze | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Static type checking with mypy | |
| run: | | |
| mypy --version | |
| mypy -p basin3d --python-version ${{ matrix.python-version }} | |
| - name: Make artifact directory | |
| run: | | |
| mkdir -p ${{ github.workspace }}/artifacts | |
| - name: Test with pytest | |
| run: | | |
| PYTHONPATH=. pytest -v -m "not mypy" --cov=basin3d --cov-report term --cov-report html:${{ github.workspace }}/artifacts | |
| - name: Documentation and Doctests | |
| run: | | |
| cd docs | |
| PYTHONPATH=.. make doctest linkcheck html | |
| - name: Archive code coverage results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: code-coverage-report | |
| path: ${{ github.workspace }}/artifacts | |
| # If true, an artifact with a matching name will be deleted before a new one is uploaded. | |
| # If false, the action will fail if an artifact for the given name already exists. | |
| # Does not fail if the artifact does not exist. | |
| # Optional. Default is 'false' | |
| overwrite: true |