feat(nextflow.config): Added new param variables and defaults to the …

…config file

nextflow.config

@@ -20,6 +20,48 @@ params {
     full_dbs                    =  false // true full_dbs, false reduced_dbs
     alphafold2_model_preset     = "monomer" // for AF2 {monomer (default), monomer_casp14, monomer_ptm, multimer}
     alphafold2_db               = null
+
+    // Database prefixes
+    bfd_prefix			= null
+    smallbfd_prefix		= null
+    mgnify_prefix		= null
+    pdb70_prefix		= null
+    pdb_mmcif_prefix		= null
+    uniclust30_prefix		= null
+    uniref90_prefix		= null
+    pdb_seq_prefix		= null
+    uniprot_prefix		= null
+    alphafold_params_prefix	= null
+    mmcif_path			= null
+    mmcif_obsolete		= null
+    uniclust30_db		= null
+    bfd_first_non_consensus_sequences = null
+    uniprot_fasta		= null
+    pdb_seqres_txt		= null
+    bfd_metaclust_clu_complete_id30_c90_final_seq_sorted_opt = null
+    uniref90_fasta		= null
+    mgy_clusters_fasta		= null
+    uniclust30_prefix		= null
+
+    bfd_name			= null
+    smallbfd_name		= null
+    mgnify_name			= null
+    pdb70_name			= null
+    pdb_mmcif_name		= null
+    uniclust30_name		= null
+    uniref90_name		= null
+    pdb_seqres_name		= null
+    uniprot_name		= null
+    alphafold_params_name	= null
+    mmcif_files_name		= null
+    mmcif_obsolete_name		= null
+    uniclust30_db_name		= null
+    bfd_first_non_consensus_sequences_name = null
+    uniprot_fasta_name		= null
+    pdb_seqres_txt_name		= null
+    bfd_metaclust_clu_complete_id30_c90_final_seq_sorted_opt_name = null
+    uniref90_fasta_name		= null
+    mgy_clusters_fasta_name	= null
 
     // Alphafold2 links
     bfd                         = null