Workflow file for this run
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| name: nf-core AWS full size tests | |
| # This workflow is triggered on published releases. | |
| # It can be additionally triggered manually with GitHub actions workflow dispatch button. | |
| # It runs the -profile 'test_full' on AWS batch | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run AWS AlphaFold2 full monomer tests | |
| if: github.repository == 'nf-core/proteinfold' | |
| runs-on: ubuntu-latest | |
| # Do a full-scale run on each of the mode | |
| strategy: | |
| matrix: | |
| mode: | |
| [ | |
| "_alphafold2_standard", | |
| "_alphafold2_split", | |
| "_alphafold2_multimer", | |
| "_colabfold_local", | |
| "_colabfold_webserver", | |
| "_colabfold_multimer", | |
| ] | |
| steps: | |
| - name: Launch workflow via tower | |
| uses: nf-core/tower-action@v3 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/proteinfold/work-${{ github.sha }} | |
| parameters: | | |
| { | |
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/proteinfold/results-${{ github.sha }}/mode_${{ matrix.mode }}" | |
| } | |
| profiles: test_full_${{ matrix.mode }},aws_tower | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log |