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bio
bio
 
 
1-2-frequent_words.py
1-2-frequent_words.py
 
 
1-2-pattern_count.py
1-2-pattern_count.py
 
 
1-3-pattern_matching.py
1-3-pattern_matching.py
 
 
1-3-reverse_complement.py
1-3-reverse_complement.py
 
 
2-98.py
2-98.py
 
 
2-99.py
2-99.py
 
 
2-break.py
2-break.py
 
 
ba-102-6.py
ba-102-6.py
 
 
ba-102.py
ba-102.py
 
 
ba-103-1.py
ba-103-1.py
 
 
ba1-198-3.py
ba1-198-3.py
 
 
ba1-407-3.py
ba1-407-3.py
 
 
ba1-407-6.py
ba1-407-6.py
 
 
ba12.py
ba12.py
 
 
ba13.py
ba13.py
 
 
ba2-100.py
ba2-100.py
 
 
ba2-104-4.py
ba2-104-4.py
 
 
ba2-104-7.py
ba2-104-7.py
 
 
ba2-112-4.py
ba2-112-4.py
 
 
ba2-156-7.py
ba2-156-7.py
 
 
ba2-3.py
ba2-3.py
 
 
ba2-6.py
ba2-6.py
 
 
ba2-7.py
ba2-7.py
 
 
ba43.py
ba43.py
 
 
ba45.py
ba45.py
 
 
ba76.py
ba76.py
 
 
ba93.py
ba93.py
 
 
ba94.py
ba94.py
 
 
ba95.py
ba95.py
 
 
backtracking_alighment.py
backtracking_alighment.py
 
 
backtracking_dag.py
backtracking_dag.py
 
 
better_bw_matching.py
better_bw_matching.py
 
 
bioinfo.py
bioinfo.py
 
 
bw_matching.py
bw_matching.py
 
 
bw_matching_2.py
bw_matching_2.py
 
 
bw_position.py
bw_position.py
 
 
bwt_cons.py
bwt_cons.py
 
 
change.py
change.py
 
 
circular_string.py
circular_string.py
 
 
combinations.py
combinations.py
 
 
computing_frequencies.py
computing_frequencies.py
 
 
contigs.py
contigs.py
 
 
de_bruijn.py
de_bruijn.py
 
 
de_bruijn_fromk.py
de_bruijn_fromk.py
 
 
debruijn_read_pair.py
debruijn_read_pair.py
 
 
direct_pi_multirun.py
direct_pi_multirun.py
 
 
distances_between_leaves.py
distances_between_leaves.py
 
 
edit_distance.py
edit_distance.py
 
 
emission_prob.py
emission_prob.py
 
 
enthro.py
enthro.py
 
 
euler.py
euler.py
 
 
euler_path.py
euler_path.py
 
 
expect_max.py
expect_max.py
 
 
farthest_first_traversal.py
farthest_first_traversal.py
 
 
faster_frequent_words.py
faster_frequent_words.py
 
 
fitting_alignment.py
fitting_alignment.py
 
 
gibbs_sampling.py
gibbs_sampling.py
 
 
global_alignment.py
global_alignment.py
 
 
graph.py
graph.py
 
 
greedy_motif.py
greedy_motif.py
 
 
greedy_motif_search.py
greedy_motif_search.py
 
 
greedy_motif_search_laplace.py
greedy_motif_search_laplace.py
 
 
greedy_sort_reversals.py
greedy_sort_reversals.py
 
 
hidden_path_prob.py
hidden_path_prob.py
 
 
hmm_parameter_estimation.py
hmm_parameter_estimation.py
 
 
hmm_profile.py
hmm_profile.py
 
 
hmm_profile_sigma.py
hmm_profile_sigma.py
 
 
limb_length.py
limb_length.py
 
 
lloyd_algorithm.py
lloyd_algorithm.py
 
 
local_alignment.py
local_alignment.py
 
 
long_rep.py
long_rep.py
 
 
longest_repeat.py
longest_repeat.py
 
 
longest_shared_substring.py
longest_shared_substring.py
 
 
manhattan_tourist.py
manhattan_tourist.py
 
 
manhattan_tourist_across.py
manhattan_tourist_across.py
 
 
median_string.py
median_string.py
 
 
nearest_neighbours.py
nearest_neighbours.py
 
 
non_branching_paths.py
non_branching_paths.py
 
 
num_paths.py
num_paths.py
 
 
outcome_likelihood.py
outcome_likelihood.py
 
 
overlap_alignment.py
overlap_alignment.py
 
 
overlap_graph.py
overlap_graph.py
 
 
perm_breakpoints.py
perm_breakpoints.py
 
 
prefix_tree_matching.py
prefix_tree_matching.py
 
 
randomized_motif_search.py
randomized_motif_search.py
 
 
read_pair.py
read_pair.py
 
 
readme.txt
readme.txt
 
 
reverse_bwt_cons.py
reverse_bwt_cons.py
 
 
shortest_non_shared_substring.py
shortest_non_shared_substring.py
 
 
squared_error_distortion.py
squared_error_distortion.py
 
 
string_composition.py
string_composition.py
 
 
string_reconstruction.py
string_reconstruction.py
 
 
suffix_array.py
suffix_array.py
 
 
suffix_tree.py
suffix_tree.py
 
 
suffix_tree_from_array.py
suffix_tree_from_array.py
 
 
synteny_block.py
synteny_block.py
 
 
tree_coloring.py
tree_coloring.py
 
 
trie.py
trie.py
 
 
trie_cons.py
trie_cons.py
 
 

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My poke at bioinformatics-related stuff. Meant for fun.

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bioinformatics related tasklets

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