Compare reference (#606)

Add CI test flow to save and store a compare reference

.github/workflows/create-compare-reference-linux.yml

@@ -0,0 +1,69 @@
+name: Save compare reference (Linux worker)
+
+on:
+  push:
+    tags:
+      - 'ammr-*'
+  workflow_dispatch:
+    inputs:
+      git_reference:
+        description: 'Which Git reference to check out. Examples: "refs/tags/v0.2.1", "refs/heads/master".'
+        default: refs/tags/vX.Y.Z
+        required: true
+
+
+concurrency: 
+  group: compare-test-${{ github.ref }}
+  cancel-in-progress: true
+
+
+jobs:
+  test:
+    runs-on: [self-hosted, linux]
+    container: ghcr.io/anybody/anybodycon-linux:latest
+
+    steps:
+      - name: Set variables
+        env:
+          DEFAULT_GIT_REFERENCE: refs/heads/master
+        run: |
+          echo "GIT_REFERENCE=${{ github.event.inputs.git_reference || env.DEFAULT_GIT_REFERENCE }}" >> $GITHUB_ENV
+
+
+      - name: Checkout repository at ${{ env.GIT_REFERENCE }}
+        uses: actions/checkout@v2
+        with:
+          ref: ${{ env.GIT_REFERENCE }}
+          fetch-depth: 0
+
+
+      - name: Run test for compare
+        env:
+          RLM_LICENSE_PASSWORD: ${{ secrets.LICENSE_PASSWORD }}
+        run: |
+          pytest --runslow \
+            -n 4 \
+            --anytest-output=.output \
+            --anytest-name=${{ env.GIT_REFERENCE }} \
+            Tests
+
+
+      - name: Construct storage name from AMS version
+        shell: python
+        run: |
+          import os, anypytools
+          name = anypytools.tools.anybodycon_version()
+          name = name.partition(" (")[0].replace(" ","")
+          name = "linux-ams-"+name.replace(".","-")
+          with open(os.environ["GITHUB_ENV"], "a") as fp:
+            fp.write(f"CONTAINER_NAME={name}")
+
+      - uses: LanceMcCarthy/[email protected]
+        name: Upload compare reference to Azure
+        with:
+          connection_string: ${{ secrets.AZURE_CONN_STR }}
+          container_name: ${{env.CONTAINER_NAME}}
+          source_folder: .output/${{ env.GIT_REFERENCE }}
+          destination_folder: ${{ env.GIT_REFERENCE }}
+          clean_destination_folder: true
+          fail_if_source_empty: true

.github/workflows/create-compare-reference.yml

@@ -1,7 +1,6 @@
 name: Create compare reference
 
 on:
-  pull_request:
   push:
     tags:
       - 'ammr-*'

.github/workflows/nighly-tests.yml

@@ -3,10 +3,6 @@ name: Nightly Full AMMR tests
 on:
   schedule:
     - cron: 0 3 * * *
-  pull_request_review_comment:
-    types: [created, edited]
-  pull_request:
-    types: [opened]
   workflow_dispatch:
 
 concurrency: 
@@ -17,15 +13,11 @@ concurrency:
 jobs:
   test:
     runs-on: [self-hosted, AnyBody]
-    if: contains(github.event.comment.body, '#Run full test') || github.event_name == 'schedule' || github.event_name == 'workflow_dispatch'
 
     env:
       # Triggers a warning at 20 deg muscles angles
       ShortestPathMaxAngle: 0.3491
-
 
-    strategy:
-      fail-fast: false
 
     steps:
       - uses: actions/checkout@v2
@@ -44,7 +36,6 @@ jobs:
           if (Test-Path -Path $Env:MAMBA_ROOT_PREFIX\envs\_ammr_test) {$OPR = "update"} else {$OPR = "create"}
           micromamba env $OPR -y -n _ammr_test -f Tests\test-environment.yml
 
-
       - name: Run full AMMR tests
         run: |
           ~\micromamba.exe shell hook -s powershell | Out-String | iex
@@ -53,4 +44,19 @@ jobs:
           cd Tests
           pytest --runslow -n 4 --instafail 
 
-    
+  test-linux:
+    runs-on: [self-hosted, linux]
+    container: ghcr.io/anybody/anybodycon-linux:latest
+
+    env:
+      # Triggers a warning at 20 deg muscles angles
+      ShortestPathMaxAngle: 0.3491
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Run full AMMR tests
+          RLM_LICENSE: [email protected]
+          RLM_LICENSE_PASSWORD: ${{ secrets.LICENSE_PASSWORD }}
+        run: pytest --runslow -n 4 --instafail Tests
+
+

Tests/AnyMocap/Test_ADL_Gait.any

@@ -33,8 +33,9 @@ Main =
 
   AnyOperationSequence  TestRunApplication = 
   {
-    //AnyOperation& ParameterId =  Main.RunParameterIdentification;
-    AnyOperation& RunAnalysis = Main.RunAnalysis; 
+    AnyOperation& LoadParameters =  Main.RunAnalysis.LoadParameters;
+    AnyOperation& MarkerTracking =  Main.RunAnalysis.MarkerTracking;
+    AnyOperation& InverseDynamics = Main.RunAnalysis.InverseDynamics; 
   };
 
   #ifndef CREATE_IMAGE