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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 16

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 259 repositories
  • aind-qc-capsule-example Public

    An example capsule that generates the quality_control.json file and gets indexed into DocDB

    AllenNeuralDynamics/aind-qc-capsule-example’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 11, 2024
  • aind-slims-api Public

    AIND-specific access to data stored in SLIMS

    AllenNeuralDynamics/aind-slims-api’s past year of commit activity
    Python 0 MIT 1 4 3 Updated Oct 11, 2024
  • aind-smartspim-destripe Public

    Image processing capsule to remove streaks from light-sheet images.

    AllenNeuralDynamics/aind-smartspim-destripe’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Oct 10, 2024
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 10, 2024
  • aind-smartspim-flatfield-estimation Public

    Performs large-scale flatfield correction using zarr format

    AllenNeuralDynamics/aind-smartspim-flatfield-estimation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 10, 2024
  • aind-smartspim-validation Public

    Data validation scrips for the SmartSPIM data.

    AllenNeuralDynamics/aind-smartspim-validation’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Oct 10, 2024
  • Aind.Behavior.VrForaging.Analysis Public

    A repository with analysis code for the aind-vr-foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging.Analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 4 0 Updated Oct 10, 2024
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 91 (2 issues need help) 3 Updated Oct 10, 2024
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 23 1 Updated Oct 10, 2024
  • metadata-chatbot Public

    LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

    AllenNeuralDynamics/metadata-chatbot’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 10, 2024
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