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montage_qc plots: configurable max residual and pointmatch #263

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Dec 17, 2024
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montage_qc plots: configurable max residual and pointmatch #263

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33 changes: 20 additions & 13 deletions asap/em_montage_qc/plots.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ def tilespecs_to_xs_ys(tilespecs):
return zip(*(bbox_tup_to_xs_ys(ts.bbox) for ts in tilespecs))


def point_match_plot(tilespecsA, matches, tilespecsB=None):
def point_match_plot(tilespecsA, matches, tilespecsB=None, match_max=500):
if tilespecsB is None:
tilespecsB = tilespecsA

Expand All @@ -70,10 +70,11 @@ def point_match_plot(tilespecsA, matches, tilespecsB=None):
xs.append([0.1, 0])
ys.append([0.1, 0.1])

if (set(tId_to_ctr_a.keys()) != set(tId_to_ctr_b.keys())):
clist.append(500)
else:
clist.append(200)
# if (set(tId_to_ctr_a.keys()) != set(tId_to_ctr_b.keys())):
# clist.append(500)
# else:
# clist.append(200)
clist.append(match_max)

for m in matches:
match_qId = m['qId']
Expand Down Expand Up @@ -131,7 +132,7 @@ def point_match_plot(tilespecsA, matches, tilespecsB=None):
return plot


def plot_residual(xs, ys, residual):
def plot_residual(xs, ys, residual, residual_max=None):
w = np.ptp(xs)
h = np.ptp(ys)
base_dim = 1000
Expand All @@ -142,8 +143,10 @@ def plot_residual(xs, ys, residual):
h = base_dim
w = int(np.round(base_dim * w / h))
p = figure(width=w, height=h)
if residual_max is None:
residual_max = max(residual)
color_mapper = LinearColorMapper(
palette=Viridis256, low=min(residual), high=max(residual))
palette=Viridis256, low=min(residual), high=residual_max)

source = ColumnDataSource(data=dict(x=xs, y=ys, residual=residual))

Expand All @@ -164,7 +167,7 @@ def plot_residual(xs, ys, residual):


def plot_residual_tilespecs(
tspecs, tileId_to_point_residuals, default_residual=50):
tspecs, tileId_to_point_residuals, default_residual=50, residual_max=None):
tile_residual_mean = cr.compute_mean_tile_residuals(
tileId_to_point_residuals)
xs, ys = tilespecs_to_xs_ys(tspecs)
Expand All @@ -173,7 +176,7 @@ def plot_residual_tilespecs(
for ts in tspecs
]

return plot_residual(xs, ys, residual)
return plot_residual(xs, ys, residual, residual_max=residual_max)


def montage_defect_plot(
Expand Down Expand Up @@ -262,17 +265,21 @@ def montage_defect_plot(

def create_montage_qc_plots(
tspecs, matches, disconnected_tiles, gap_tiles,
seam_centroids, stats, z, tile_url_format=None):
seam_centroids, stats, z, tile_url_format=None,
match_max=500, residual_max=None):
# montage qc
layout = montage_defect_plot(
tspecs, matches, disconnected_tiles, gap_tiles,
seam_centroids, stats, z, tile_url_format=None)
seam_centroids, stats, z, tile_url_format=tile_url_format)

# add point match plot in another tab
plot = point_match_plot(tspecs, matches)
plot = point_match_plot(tspecs, matches, match_max=match_max)

# montage statistics plots in other tabs
stat_layout = plot_residual_tilespecs(tspecs, stats["tile_residuals"])
stat_layout = plot_residual_tilespecs(
tspecs, stats["tile_residuals"],
residual_max=residual_max
)

tabs = []
tabs.append(TabPanel(child=layout, title="Defects"))
Expand Down