Merge branch 'rc/0.5.0'

AllenInstitute · Jan 17, 2025 · ccc117a · ccc117a
2 parents 52c073b + d0a96af
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diff --git a/descriptions/Zeng_Aging_Mouse_10Xv3.md b/descriptions/Zeng_Aging_Mouse_10Xv3.md
@@ -11,10 +11,10 @@ Data](WMB-10Xv3.md).
 The expression matrices and associated metadata is hosted on AWS S3 bucket as a
 AWS Public Dataset:
 
-| Component           | Current Version                                                                                                                                                                                              | Size   |
-|---------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------|
+| Component           | Current Version                                                                                                                                                                                           | Size   |
+|---------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------|
 | Expression Matrices | [s3://allen-brain-cell-atlas/expression_matrices/Zeng-Aging-Mouse-10Xv3/20241130](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#expression_matrices/Zeng-Aging-Mouse-10Xv3/20241130/) | 26 GB  |
-| Cell and gene metadata | [s3://allen-brain-cell-atlas/metadata/Zeng-Aging-Mouse-10Xv3/20241130](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#metadata/Zeng-Aging-Mouse-10Xv3/20241130/)                       | 702 MB |
+| Cell and gene metadata | [s3://allen-brain-cell-atlas/metadata/Zeng-Aging-Mouse-10Xv3/20250131](https://allen-brain-cell-atlas.s3.us-west-2.amazonaws.com/index.html#metadata/Zeng-Aging-Mouse-10Xv3/20250131/)                    | 699 MB |
 
 Data is being share under the CC BY NC 4.0 license.
 

diff --git a/intro.md b/intro.md
@@ -69,6 +69,8 @@ notebook.
   (Kimberly Siletti)**
 
 ## Release Notes
+* **[Update aging Mouse UMAP (version 20250131), abc_atlas_access (v0.5.0)]**
+  * Fix 588 cells with missing UMAP coordinates.
 * **[Aging Mouse data (version 20241130), abc_atlas_access (v0.4.0)]**
   * Add the Jin et al., aging mouse dataset.
     * 1.2 million cells divided into adult and aged mouse cells.

diff --git a/notebooks/Zeng_Aging_Mouse_10x_snRNASeq_tutorial.ipynb b/notebooks/Zeng_Aging_Mouse_10x_snRNASeq_tutorial.ipynb
diff --git a/notebooks/Zeng_Aging_Mouse_clustering_analysis_and_annotation.ipynb b/notebooks/Zeng_Aging_Mouse_clustering_analysis_and_annotation.ipynb
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "abc_atlas_access"
-version = "0.4.0"
+version = "0.5.0"
 description = "A package for accessing/processing data from the ABC Atlas"
 dependencies = [
   "anndata",