admin/support-py311

[evamaxfield]

Description

Opening to see what breaks. Python 3.11 support is slowly rolling out to different libraries so we should track this and see when we can do it too.

Thanks for contributing!

[codecov-commenter]

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (45dd26f) 94.20% compared to head (a4dfe1b) 94.20%.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #446   +/-   ##
=======================================
  Coverage   94.20%   94.20%           
=======================================
  Files          48       48           
  Lines        4279     4279           
=======================================
  Hits         4031     4031           
  Misses        248      248           

Impacted Files	Coverage Δ
aicsimageio/formats.py	100.00% <ø> (ø)
aicsimageio/readers/czi_reader.py	94.51% <100.00%> (ø)

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[AetherUnbound]

Was there a reason these were pinned?

[toloudis]

AllenCellModeling/aicspylibczi#110 might be a start for making this work

[SeanLeRoy]

Did we decide to postpone this until after the refactor? @evamaxfield

[evamaxfield]

I may have said that -- but it was likely me misspeaking. I primarily use py311 now so I would say that we should have a release of aicsimageio that supports it. Our upstreams are the problem tho. I will rerun this just to see what happens.

[evamaxfield]

Oh! The issue here isn't someone elses upstream, it's our own upstream. The only failing tests (besides docs) look to be CZI tests because we haven't release support for 3.11 on aicspylibczi yet.

@toloudis has the best knowledge outside of Jamie but I think the change we need to make is here: https://github.com/AllenCellModeling/aicspylibczi/blob/9c9d62630275a71fd7c5832fd3300f64a0c89e29/.github/workflows/PublishLinux.yml#L22

?? I have no idea how to add support for new python versions in that lib.

[toloudis]

AllenCellModeling/aicspylibczi#110
supports python 3.11

[toloudis]

hm, the pip install of aicspylibczi 3.1.0 is now failing. Not sure how to remedy this yet. It seems to want to build from source, which means we need to pack up all the c++ code into the tar.gz artifact.
Probably related to AllenCellModeling/aicspylibczi#90

[toloudis]

coming soon : aicspylibczi 3.1.1 with proper wheels for python 3.11

[toloudis]

the new aicspylibczi build has proper 3.11 support and all the tests passing now!