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The main goal of this repo is to enable reproduction of results shown in the paper Integrated intracellular organization and its variations in human iPS cells. We also hope this material can guide other users to apply the concepts used in the paper to their own datasets.
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All results: this requires downloading the full single cell images dataset. You will need 8Tb of space in disk to store raw and segmented images. Click here if you are interested in this.
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Results that depend on segmentation only: most results require only segmented images. In that case 100Gb of space in disk is required. Click here if you are interested in this.
Use this section to learn how to run cvapipe_analysis in a small set of cells to get familiarity with the framework.