Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add TPM matrix output for bulk data #815

Closed
jashapiro opened this issue Jan 29, 2025 · 1 comment
Closed

Add TPM matrix output for bulk data #815

jashapiro opened this issue Jan 29, 2025 · 1 comment
Assignees
@jashapiro

Comments

@jashapiro
Copy link
Member

jashapiro commented Jan 29, 2025 •
edited
Loading

We currently output only count data for bulk sequencing, but for some applications, TPM data will be preferred. We can modify the merge_bulk_quants process and the merge_counts_tximport.R script to output both TPM and count matrices using the existing salmon output files.
@jashapiro jashapiro self-assigned this Jan 29, 2025
@jashapiro jashapiro mentioned this issue Jan 29, 2025
Merged
@jashapiro
Copy link
Member Author

closed by #816

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jashapiro jashapiro

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jashapiro