Updated README/copyrights

AlexandrovLab · Feb 18, 2020 · 29e0ac3 · 29e0ac3
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diff --git a/.Rhistory b/.Rhistory
@@ -3,3 +3,4 @@ install_github("AlexandrovLab/SigProfilerMatrixGeneratorR")
 library("devtools")
 install_github("AlexandrovLab/SigProfilerMatrixGeneratorR")
 install_github("AlexandrovLab/SigProfilerMatrixGeneratorR")
+library("reticulate")
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diff --git a/README.md b/README.md
@@ -2,6 +2,7 @@
 
 # SigProfilerMatrixGeneratorR
 An R wrapper for running the SigProfilerMatrixGenerator (https://osf.io/s93d5/wiki/home/) framework.
+
 **INTRODUCTION**
 
 The purpose of this document is to provide a guide for using the SigProfilerMatrixGenerator framework to generate mutational matrices for a set of samples with associated mutational catalogues. An extensive Wiki page detailing the usage of this tool can be found at https://osf.io/s93d5/wiki/home/. For users that prefer working in a Python environment, the tool is written in Python and can be found and installed from: https://github.com/AlexandrovLab/SigProfilerMatrixGenerator
@@ -114,12 +115,14 @@ For all errors, please email the error and progress log files to the primary con
 
 **CITATION**
 
-E.N. Bergstrom, M.N. Huang, U. Mahto, M. Barnes, M.R. Stratton, S.G. Rozen, and L.B. Alexandrov (2019) SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. https://www.biorxiv.org/content/10.1101/653097v1
+Bergstrom EN, Huang MN, Mahto U, Barnes M, Stratton MR, Rozen SG, Alexandrov LB: SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. BMC Genomics 2019, 20:685
+https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6041-2
+
 
 
 **COPYRIGHT**
 
-Copyright (c) 2019, Erik Bergstrom [Alexandrov Lab] All rights reserved.
+Copyright (c) 2020, Erik Bergstrom [Alexandrov Lab] All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: