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WNet training #47

Merged
merged 71 commits into from
Nov 10, 2023
Merged

WNet training #47

merged 71 commits into from
Nov 10, 2023

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C-Achard
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@C-Achard C-Achard commented Jul 28, 2023

This PR implements WNet training directly in napari

  • Local testing
  • Upload new WNet weights based on new best model
  • Coverage
  • Docs -> done in extras WandB/Colab + docs #48

  • Rebase to fix conflicts

@C-Achard C-Achard added enhancement New feature or request feature request A new feature to add UI Related to the UI ML Related to machine learning : MONAI, Torch... labels Jul 28, 2023
@C-Achard C-Achard self-assigned this Jul 28, 2023
@C-Achard C-Achard changed the title WNet training [WIP] WNet training Jul 28, 2023
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codecov-commenter commented Aug 2, 2023

Codecov Report

Merging #47 (328ef81) into cy/training (7a4e31f) will increase coverage by 1.27%.
The diff coverage is 80.16%.

@@               Coverage Diff               @@
##           cy/training      #47      +/-   ##
===============================================
+ Coverage        80.94%   82.22%   +1.27%     
===============================================
  Files               45       46       +1     
  Lines             4923     5614     +691     
===============================================
+ Hits              3985     4616     +631     
- Misses             938      998      +60     
Files Changed Coverage Δ
napari_cellseg3d/code_models/worker_inference.py 75.56% <0.00%> (-1.49%) ⬇️
napari_cellseg3d/code_plugins/plugin_convert.py 89.63% <ø> (ø)
napari_cellseg3d/code_plugins/plugin_crf.py 78.32% <ø> (ø)
napari_cellseg3d/code_plugins/plugin_base.py 63.78% <36.00%> (-2.58%) ⬇️
napari_cellseg3d/code_models/worker_training.py 73.42% <71.65%> (+16.80%) ⬆️
napari_cellseg3d/code_models/model_framework.py 82.43% <80.00%> (+0.40%) ⬆️
...ri_cellseg3d/code_plugins/plugin_model_training.py 73.81% <80.31%> (+8.53%) ⬆️
napari_cellseg3d/interface.py 81.16% <87.50%> (+1.23%) ⬆️
napari_cellseg3d/utils.py 91.96% <93.33%> (+0.02%) ⬆️
napari_cellseg3d/_tests/fixtures.py 96.00% <100.00%> (+14.18%) ⬆️
... and 9 more

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@C-Achard C-Achard mentioned this pull request Aug 3, 2023
6 tasks
@C-Achard C-Achard marked this pull request as ready for review September 21, 2023 12:38
@C-Achard C-Achard requested a review from CYHSM September 21, 2023 12:38
@C-Achard C-Achard changed the title [WIP] WNet training WNet training Sep 21, 2023
@C-Achard C-Achard merged commit c578bd9 into cy/training Nov 10, 2023
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2 participants