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Colab notebooks update #103

Merged
merged 35 commits into from
Dec 22, 2024
Merged

Colab notebooks update #103

merged 35 commits into from
Dec 22, 2024

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C-Achard
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@C-Achard C-Achard commented Dec 17, 2024 •
edited by MMathisLab
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  • Check all notebooks run
  • Fix training notebook

@C-Achard C-Achard added fix Something needs to be or has been fixed colab labels Dec 17, 2024
@C-Achard C-Achard self-assigned this Dec 17, 2024
C-Achard and others added 19 commits December 21, 2024 11:07
@C-Achard
Refactor model save name path + comment wandb cell
981b330
@C-Achard
Update Colab_WNet3D_training.ipynb
c201a0e
@C-Achard
Improve logging in Colab
c199b5f
@C-Achard
Subclass WnetTraininWorker to avoid duplication
6a42d26
@C-Achard
Remove strict channel first
6ecb2fc
@C-Achard
Add missing channel_dim, remove strict_check=False
b7aa88b
@C-Achard
Update worker_training.py
a76037c
@C-Achard
Update worker_training.py
f722137
@C-Achard
Disable strict checks for channelfirstd
1565731
@C-Achard
Update worker_training.py
85b0640
@C-Achard
Temp disable channel first
766ceaa
@C-Achard
Fix init of Colab worker
e3286ce
@C-Achard
Move issues with transforms to colab script + disable pad/channelfirst
b647d98
@C-Achard
Enable ChannelFirst again
0e69ee4
@C-Achard
Remove strict_check = False in original worker
788903e 
Seems to be a Colab-specific issue
@C-Achard
Remove redundant code + Colab notebook tweaks
d00d1b6
@C-Achard
Revert wandb check
b42df9d
@C-Achard
Update docs + Colab inference
a5acd55
@MMathisLab
Merge branch 'main' into cy/colab-fixes
cd99114
@MMathisLab MMathisLab self-requested a review December 22, 2024 14:47
@MMathisLab MMathisLab marked this pull request as ready for review December 22, 2024 16:50
@MMathisLab MMathisLab merged commit 8c6c306 into main Dec 22, 2024
3 checks passed
@MMathisLab MMathisLab deleted the cy/colab-fixes branch December 22, 2024 19:57
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@MMathisLab MMathisLab MMathisLab approved these changes

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@C-Achard C-Achard

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@C-Achard @MMathisLab