110.a2ced6c
What's Changed
- update picard version by @ChristinaXu2017 in #282
- Qsamtofastq by @ChristinaXu2017 in #283
- update document for qmule by @ChristinaXu2017 in #284
- Qsignature Compare - handle empty vcf files by @holmeso in #285
- add exception message to log file by @ChristinaXu2017 in #286
- update log message for qmule::QSamToFastq by @ChristinaXu2017 in #287
- create new qsv document by @ChristinaXu2017 in #268
- create new qpileup document by @ChristinaXu2017 in #274
- Qprofiler2.doc by @ChristinaXu2017 in #288
- Qsignature - use cutoffs specified in options by @holmeso in #291
- qp2 - use s3 aware reader by @holmeso in #290
- remove class loading by @holmeso in #293
- Update import order in google_check.xml by @holmeso in #292
- qsignature cleanup by @holmeso in #295
- check isPresent before calling get on Optional by @holmeso in #299
- q3tiled_aligner cleanup by @holmeso in #300
- tidy up qmito by @ChristinaXu2017 in #297
- q3indel cleanup by @holmeso in #296
- continue on qmito.doc by @ChristinaXu2017 in #301
- tidy up qcoverage by @ChristinaXu2017 in #294
- fix bug in qpileup view mode by @ChristinaXu2017 in #302
- Q3ta options by @holmeso in #308
- build(all): update htsjdk jar from 2.14.1 to 2.24.1 by @holmeso in #310
- Qpileup.view.bug by @ChristinaXu2017 in #309
- update document on qbasepileup by @ChristinaXu2017 in #311
- fix(q3tiledaligner): remove dependence on GRCh37 by @holmeso in #313
- fix(qsv): incorrect index value was being passed to method by @holmeso in #314
- Qsv q3ta bug fix by @holmeso in #315
- refactor(q3tiled_aligner): allow user to pass in cached ref index map by @holmeso in #316
- feat(qsv): use ref index to determine positions by @holmeso in #319
- update MODE:add header line in remove mode by @ChristinaXu2017 in #320
Full Changelog: 78.43982c9...110.a2ced6c